Gene detail

Detailed information of Bpl_scaf_2390-1.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_2390-1.10	MRNA-CAPPING ENZYME	Bpl_scaf_2390	227198	246432	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_2390-1.10

GAAATATTTGTACTTCCTGTTTCTTTTTTGATGACAAGTTGTCTTTCATTTCGTGCCAGTCTACTTACTAATTTCCGTGTTATTTCTTATTAAGTAGCTGTGTTAGATAAAACAGACAGCTAATATGCCTCCACCAGAAAGATGGCTGGAGTATGGTTCTCTAGGAGATGTAATAATGGGAACAAAGTTTGTTGCCTTTAAAGTACCCCTGAAGAAGGAACTTTTGTCTACTGTTGATGAACATGAAAAATTTGGACCTGATGATGTGATACATAAATTAAAAGATAAAGGAAAAGTTTTAGGATTGGTTATAGATGTCAATTATTCTGATAAATATTATCATAAAGGGGAATTCTGTCGACAAAATATTGAACACGAAAAGATTTATGCTGGTGGCCACTTGGTACCAAATGATGCAGTTGTTTACAGATTTTTTGATGTAGTAGAAAAGTTTATCAACAGAACGAAAACAGATGATGTAGTGATAGGTGTACATTGTACACATGGAGTCAACAGAACTGGATATATTGTTTGTAGATATATGGTTGAGAGACTAGGTATTGATCCATCTGAAGCAATGAATGCTTTTAGCACAGCAAGAGGACATCCCATTGAACGACAAAACTATATTGACGATTTGATGACAAGAAAACATAACCCACACTATGTGTTTGGGGATCATCCGCCAGTACTTAAAGAGGAAAATTCAAATAGTACAAATAAGAACAGACGATATTACCGTAGAAATAGACGTCAGAAAAGAATACCACAGAGTATCATGGGAACGGCTAATGGTGAACAAGGTTTTGATAAACAGCAATCCAGTCATCAACATCATTCAAATGGAGAATTTGATGAACGTCATAAAATGCCTGAAAAATCTAATGATTCCAGAGAAGATTATCATGGTTACGATTACCATAGAGAATCCAGTCATCAACATAATTCAAATGAAGAATTTGATAAATGTCATAGAATGCCTGAAAGATCTTATAATTACAGAGGAGATTGTCATGGCTACGATCAGCAAAATTATCACTACGCACATAGACCTTTTAATGACAAAAACAGTCGCAGAGCTGATGCAAGGCCTTATCCAAATTGTAGATGGAAATCTTTTCCTCCAAATGATTATTCATCACACAAGTGTGAAGACAACTATAGAATGGAATCAAGACGTAATTATCAGTCACATCCTAATGTACATATACCCAGTGATGAATATTAGATTAATTTATCATGTGATCATGTACTGTTTGTCTATGATACTGTTAATGCACAGATGATGTGAAAACAATATAACTGAAATATTGTTGAAAGTGGCATTAAACACCATAAACCCAACCCTATTAATGTGAAAAATGCAATGGCAACAAGATCACATGTTTAAATGGATATTAAAGCTCTTTTTTTTTTGTTACTGTAAAACGTTACATTCAACTTGACATTGATAATTATGTAATAAAAAATCTGTTTGCTTGCACAAAATTTCCTAAACGTTACATGACTCATTAGTAAGACTGTCATACCAAGCCAGCTGACAAACTAAGTAATTATATACCATTAGTGGGTGCCGATATTTGCCGAAGTGTGAATTGTACCAGTTGTAGTCATGGATGCTGACTATCACATGGTATGTGAATTGACTAATTTTAAAAAAAAACAGAGTTTATTGTAAAAAAAATGTTTGTACTTAAAAATAGAAACGATCTTCCTTAATTTATAATGATGCCATGTGATAGAAGAAAATGTAGAATACATGCGATTTTTCAACAAACATAAATGCTCTTCACTGAATGTGGTGCACAATCAGCTTCTGATCATCTGCCAATTCACGTCAAATCAGAGGTCATCATGAATAAATTGGTGTTCCTAATTTTTATTTTCCCACTTGAAAATCAATTTATTTTTAAGAATTTCTAACCGAAATTTGTACAAATTGAGGTGCTATGAATGGGACTATAGTTTTAGGTTCCGTCCTTTGATATATTGTCTGTCACATTAAAAATTTAAGTTTTCCGGACTTTTTTTGGACATCCTTTGATATATTGACTTGGTATGTGGCTATATCTAAATGAGTTACAGTTTAAGTTCGAATTTCGTTCCGGTCGAATGATTTTTGGCTGAGTTGTGGCCCTTGAACTTGTATTTTTTGTTAAAATTTTAAGTTGTCCAGACTTTTTTTTTTACGTCCTTTGATATATTGACTTGATATTTGGTATGTGGCTATATCTAGATGAGTTACAGTTGAAGTTCGAATTTCATTCTGGTCGAATGATTTTTGGCTGAGTTATGGCCCTTGAACTTGTAATTTAAAATCTAGTCACTGCAAAGTGATACTTCTAATATTTTAGGTCCTCTGATTTTTGCAGCCGGTAGGCGGCCATCTTGGATGGAGGTTGGGTTCACAGGACATAATTTTGAAAGTTGACCACCTAAGGACCATTCATACCATGTTTGCTTTAAATTTACTTGCTGGTTTCAGAGGAGAAGACTTTTAAATATTTTTTCCATAGGGTCCTATGTTAAAACTAAGTCGAGTCATGGCGGCCATCTTGAATTTCCGATCAGCAAACGATTCACAAATTTAGTACAGGACCACCCAAAGATCATTCCTGTAAAGTCACAATTCAATTGGCTGAGTGGTTTCTAACGAGAAGATTTTTAAAATTTCGACCAATCAGAACACATTATGGGCCCTGGCAGCCATGTTGGATTTCCGATCTACACCAAAAACACAAATCTGGTAGAGGACCATCAAATGAACATTTATGGCAAGTTTGGTTGAAATCTGTTCAGCGGTTTCAGAGAAGAAGAGTTAAATGTGAAAAGCTAACGGACGGACGGACGACGGACACTTACCCATGACAAAAGCTCACATGGCCTTTGGCCAGGTGAGCTAAAAAGAGCTTTAATACACTTTTAAATCTCATATTCGGCTCCCAAAAATGTCGCTCAAGACCAAAATCTTGACTGAGAAAGTTTACCTCCAATATTGTCTCCACTGTATCCTTGATTAACTCTTTTTTTTTTGTTGTCCATTTTCGATCAAATATACTTATTGTAGTTGTGGCCAGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000340	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR020422	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR051029	Family	mRNA Capping Enzyme and RNA Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10367	MRNA-CAPPING ENZYME	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004651	Molecular Function	polynucleotide 5'-phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14165	K14165; atypical dual specificity phosphatase	EC:3.1.3.16 EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_2390-1.10 global RNA-seq network