Gene detail

Detailed information of Bpl_scaf_23288-2.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_23288-2.7	CYSTEINYL-TRNA SYNTHETASE	Bpl_scaf_23288	223488	256437	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_23288-2.7

ATGGGGCATGCTAGGTCCTATATATCGTTTGATATTTTACGGAGAGTTCTACAGGATTATTTCAAATATGAAGTCTTTTACTGCATGAATATCACAGATATTGATGACAAGATAATCAAAAGAGCCAGGCAAAACTATTTGTTTGAGAAATATCTACAAGAAAACCATCCGTGGAAGAAGATAATGGATGACACTATAGAGGCTATGAAGCCATTTGCAGTTAAAGTTAAGACTGAGACTGACCCTGACAAAAAAGCTATGTATGATAGAATGTCAGTTAAAGTTAACACAGGACTGACAGCTTTAGAAGCTGTTGTAAATAACGATAAAGGAACAGAAGAAGTTCAACAGGCCAGACAGGCATTGTTAGAAGCATCTAGAGACATTATTGCTGATTGGCTGGATGGTCTTCATGGGTCAGAGGTCACAGACAATTCTATATTTGCCAGTCTACCAAAGCACTTTGAAGAGCAGTTTCACCAAGATATGAAAGCTTTGAATGTTTTACCAGCAGACGTTCTAACCAGAGTCAGTGAATATGTACCAGAAATTATAGAATTTGTACAGAAAATCATAGACAATGGATACGGATATGAATCAAATGGGTCTGTATATTTTGATGCTCCAGCTTTTGATCAGAGTAAAGATCATTTCTACGGGAAACTGGTACCCGAATCCATAGGGGATACCAAGGCACTAGCAGAAGGAGAAGGTGATCTGTCTAAAGACAAGGGGTCTGAGAAGAAAAGTCCAATTGATTTTGCTCTATGGAAAGCCTCCAAGCCTGGAGAACCATCATGGGATTCACCATGGGGAAAGGGCAGACCAGGTTGGCACATTGAATGCTCTGTGATGGCTAGTAGTATATTGGGACAGTCCATGGAAATACACACTGGAGGCTGTGATCTCAAGTTTCCCCATCATGAAAATGAACTAGCCCAAGCTGAGGCATATTATGAGAACGATCACTGGGTTCGTTACTTCCTACATTCAGGTCATTTGACAATAGAAGGATGCAAGATGTCCAAGTCTCTCAAAAATTTTGTTTCAATCACTGATGCTTTAAAACAACACACATCCAGACAACTACGACTTTTGTTTCTCTTACATTCGTGGAATGACACTTTAGATTATGGTGAAAACAGCATGGAAGGAGCGTTGAAATTCGAAAAATTGTTACAGGAGTTTTTCCTGACAATTCAAAGTATCTTGAGATCAACAGCTTCAACTGGTATTGCAGCTTTCCATAAATGGAACCCAGAGGAAATCGCCCTCAATCAAAGGCTAATGGAAACTAGAACCAATGTTCATGAGGCTCTATGTGATTCAGTAGATACCAAGTCAGCTCTAGATGAAGTCAGAGAGTTGATAAAAGCCAGCAATGTATACATCAGCAAGCACAGGACAGATAAAACATTACCTAACAGAATGTTACTTCAAAATATAGCTTCATTCATCACTAATTTACTCAAGATGTTTGGTGCAATAGAAGCAGACGACAGTGTAGGGTTTCCAATGGCAACAGGTCAAGCTGTAAATTTAGAAGAAACAGTAATGCCGTACCTAACAGCTTTTGCTGAATTCAGAGAAAATGTACGCAAGGTAGCAATAGAACAGAAAGTTGTTCCCATTTTAAAACACTGTGATGAAGTTAGAAACAAAGTCTTGCCCAACCTTGGTGTTAGATTAGAAGACCAAGACAATGCCCCAGCCGTAATCAAACTCCTTGATGCAGAAACTATTAGAAAAGAAAGGGAGTTGGAAGAACAGAGAAGAATAGAAAAAGAGAGAAAGAAACAAGAACAAGAAGCTGCTAAGGCAGCTAAGGAAGCACTAGATAGAATTCCTCCTTCAGAACTCTTCAAAGGTGAAACAGATAAATATTCAAAGTTTGATGGCAAGGGTATACCAACACATGATGTTGAGGGAAATGAATTGACGAAATCTGCTCTGAAGAAATTGACGAAACAATATGATGCACAGGAGAAAAAGTACAATAAATTGATGGCTTCACAGAAAGAAGCCTCTGGCGACGGTGCTAAAAAGTGA

Transcript

Bpl_scaf_23288-2.7

ACAGGAAGTGTTCATACCACAGAATGGTAAAAGAGTTTTCTGGTACAGTTGTGGACCAACAGTCTATGATTCCTCACACATGGGGCATGCTAGGTCCTATATATCGTTTGATATTTTACGGAGAGTTCTACAGGATTATTTCAAATATGAAGTCTTTTACTGCATGAATATCACAGATATTGATGACAAGATAATCAAAAGAGCCAGGCAAAACTATTTGTTTGAGAAATATCTACAAGAAAACCATCCGTGGAAGAAGATAATGGATGACACTATAGAGGCTATGAAGCCATTTGCAGTTAAAGTTAAGACTGAGACTGACCCTGACAAAAAAGCTATGTATGATAGAATGTCAGTTAAAGTTAACACAGGACTGACAGCTTTAGAAGCTGTTGTAAATAACGATAAAGGAACAGAAGAAGTTCAACAGGCCAGACAGGCATTGTTAGAAGCATCTAGAGACATTATTGCTGATTGGCTGGATGGTCTTCATGGGTCAGAGGTCACAGACAATTCTATATTTGCCAGTCTACCAAAGCACTTTGAAGAGCAGTTTCACCAAGATATGAAAGCTTTGAATGTTTTACCAGCAGACGTTCTAACCAGAGTCAGTGAATATGTACCAGAAATTATAGAATTTGTACAGAAAATCATAGACAATGGATACGGATATGAATCAAATGGGTCTGTATATTTTGATGCTCCAGCTTTTGATCAGAGTAAAGATCATTTCTACGGGAAACTGGTACCCGAATCCATAGGGGATACCAAGGCACTAGCAGAAGGAGAAGGTGATCTGTCTAAAGACAAGGGGTCTGAGAAGAAAAGTCCAATTGATTTTGCTCTATGGAAAGCCTCCAAGCCTGGAGAACCATCATGGGATTCACCATGGGGAAAGGGCAGACCAGGTTGGCACATTGAATGCTCTGTGATGGCTAGTAGTATATTGGGACAGTCCATGGAAATACACACTGGAGGCTGTGATCTCAAGTTTCCCCATCATGAAAATGAACTAGCCCAAGCTGAGGCATATTATGAGAACGATCACTGGGTTCGTTACTTCCTACATTCAGGTCATTTGACAATAGAAGGATGCAAGATGTCCAAGTCTCTCAAAAATTTTGTTTCAATCACTGATGCTTTAAAACAACACACATCCAGACAACTACGACTTTTGTTTCTCTTACATTCGTGGAATGACACTTTAGATTATGGTGAAAACAGCATGGAAGGAGCGTTGAAATTCGAAAAATTGTTACAGGAGTTTTTCCTGACAATTCAAAGTATCTTGAGATCAACAGCTTCAACTGGTATTGCAGCTTTCCATAAATGGAACCCAGAGGAAATCGCCCTCAATCAAAGGCTAATGGAAACTAGAACCAATGTTCATGAGGCTCTATGTGATTCAGTAGATACCAAGTCAGCTCTAGATGAAGTCAGAGAGTTGATAAAAGCCAGCAATGTATACATCAGCAAGCACAGGACAGATAAAACATTACCTAACAGAATGTTACTTCAAAATATAGCTTCATTCATCACTAATTTACTCAAGATGTTTGGTGCAATAGAAGCAGACGACAGTGTAGGGTTTCCAATGGCAACAGGTCAAGCTGTAAATTTAGAAGAAACAGTAATGCCGTACCTAACAGCTTTTGCTGAATTCAGAGAAAATGTACGCAAGGTAGCAATAGAACAGAAAGTTGTTCCCATTTTAAAACACTGTGATGAAGTTAGAAACAAAGTCTTGCCCAACCTTGGTGTTAGATTAGAAGACCAAGACAATGCCCCAGCCGTAATCAAACTCCTTGATGCAGAAACTATTAGAAAAGAAAGGGAGTTGGAAGAACAGAGAAGAATAGAAAAAGAGAGAAAGAAACAAGAACAAGAAGCTGCTAAGGCAGCTAAGGAAGCACTAGATAGAATTCCTCCTTCAGAACTCTTCAAAGGTGAAACAGATAAATATTCAAAGTTTGATGGCAAGGGTATACCAACACATGATGTTGAGGGAAATGAATTGACGAAATCTGCTCTGAAGAAATTGACGAAACAATATGATGCACAGGAGAAAAAGTACAATAAATTGATGGCTTCACAGAAAGAAGCCTCTGGCGACGGTGCTAAAAAGTGAACTGAATATGCCCTCAAAATGGACACCAAAAAGTGACTGATCTGCATGTTGTCATAATTGTAGCATCATTTATTATTTATTAAATGGCAGTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01406	tRNA-synt_1e	tRNA synthetases class I (C) catalytic domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009080	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR015803	Family	Cysteine-tRNA ligase	Interproscan
IPR024909	Family	Cysteinyl-tRNA synthetase/mycothiol ligase	Interproscan
IPR032678	Domain	tRNA synthetases class I, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10890	CYSTEINYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004817	Molecular Function	cysteine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006423	Biological Process	cysteinyl-tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01883	CARS, cysS; cysteinyl-tRNA synthetase	EC:6.1.1.16	Aminoacyl-tRNA biosynthesis	ko00970	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_23288-2.7 global RNA-seq network