Gene detail

Detailed information of Bpl_scaf_23287-6.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_23287-6.7	UNCHARACTERIZED	Bpl_scaf_23287	652666	676170	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_23287-6.7

ATGAGACTTGCAATGGATGCTGATTCATCATTTGAAGATGAGTTTTATCAAAGACCAAGACGTAAACCAAAAGGTGGTAAACAGAAAAGTATCAGGGGTAACCCAGAAGGGGACAGTATCATGGGAAAAGAGAAGGGAAAGATTAGGGCACCTCCAAACAGTGATAATGACTCTTCCTTTGATGTGGTTTCTCCATCCAAGAAAAGAAAGACTCACATTAATCCAGATCCACTGGAAAATATTCCACGTAAACCAATGACAAAGCGCCATCTACAAATGTACAGTGACACAGACCTTTCATCATTAGATCAAACGGACACTCCAGACACACTCAGTCAGATCAGTTCTATCATGCCAGTATCTGATGTTTCTATGCAGACAACATTCTCACGTATGAGAAAACCAAAAGGAAGGGCAGATGTCACATTAGAAAGAGCAGTACAGAAAGCTAGAGGTCAACCTGATGGTGCAGAAAGGTCATTCCATCAGAAGAAAATCAGTAAGACAACCTTGCCAACACGTTTGTCTACTGTTAGAGAGGCCGCTGAAGGGAGAATTGACAGTTCACATGGTTCACAAGAAGTATTTGCTGAAGGAGAACCAAAATCACCTGGTGTTCAACCTTTTGAAAGAAGAAAATCTATTAAGGTAAAGCTTAAGCGAGCTGCTAGTACTGCTGCTGGACGGTTAAAGTCATTGAAGGGAAAGAAAGTACAGCTGAGTGAGAGTAGACTGATAGCAAAACACAAAATGGAGGATTCACAAATAGAAGAAACCTCAGAATCTAAAAAGACAAAATTAAAAGAGTTGACATTCAAAGAAAGGAAGAAAGTAAGAAAGATGTTGAAAAATAACTTTAGTATGATTCAAAGATCCAAAAAGATATGGGAAGAATTAAGGAGACATGATGTGAAGGAGAATAAGAAACAAGAGCTGTGTAAAGAGTTGATGGGATTTGTTAAAGGAAATATGAAAGAGTTTGCATTTGCCCATGACACAGGTAGAGTATTACAGTGCCTTGTACAGTATGGTACCACGGAACAGAAAGATATAGTATTTGAAGAAGTGAAAGATCAAATCTGTTTGATGGCCAAATCCAAGTTTGCAAAATATCTGGTTAAGAAGTTACTAGTCTATGGATCTAAGCACCATAAAAACCATGTATTCAAGAGTTTCCATGGAAATGTCAGAAAACTAGTCAGACACAGGGAAGCATCAGATCTTGTAGAATTTGCATATAATGAATATGCAAATGCACCTCAGAGACTGTCACTTTTAGAAGATTTTTATGGGCCAAGTTTTATTTTATTTAAAACCCCAGACATGAGATGCCTGGACCAGATGTTGATGTTACAACCAGATAAGAAGGATATGATTCTGAGTAACATGAAGGAGGCTTTACTTCCTCTTATTGACAAGTCAATACTTGTTCATTCAATGGTGCACAGAGTTTTCTTTGAGTTTTTTGTTCATGCCTCAGATAAGATGAGATCAGAGATGATAGAAGCATTACGAGATTCTTTAAATCATATGTTACATACAAGAGACGGATCCAGAGTAGCTATGTACTGTTTCTGGTATGGAAATGCTAAGGATAGAAAGATAATGATAAAGAGTATGAAGACACATGTGGTAAAAATATGTACAGAAGAGTATCCACATCTTGTTATGTTAGCCATGTTTGATGCTGTAGATGATACAAAACTGGTACAGAAAGCTATATTAGAGGAAATTATTAAAAATATTGAAACTATAGTAAAGAACCAGTATGGGAAGAAAGTTCTGCTGTATTTATTGAGTCCCAGGGATCCACATCACTTCCACCCAGATGTTGTCAAGATATTACAAGAGGCAGATCTTAGTACAACCAGTAAGAAACAGAAGTCCATTCGTCAGAGAGAACTGTTAGAGTATGTATCACCACCATTATTACAGTATATAGCAGAACATGCTAGAGAACTAGTGATGGATAACGCTTCTTTGTTGTTGACGTCAGCTACAATAAAACATGCTTTAGGAGATCCTACTGAAGCTATGAAAGCTATAGCAAAGATTGCTGCTGAGCCATTTGTTGCTGGAAGTTTACAAAATATGCACATAGTAGAGCATACTGCTGGTCATATTGCTCTGAAACAACTGATACAGAATGACAAAGAAAGGATCCACTCAGGCAAATCTGATCTAGTTACAGCACAGTTAGTTGGCATTCGTAAAGCACTAAAGAAAATGACATTTAAAGGAGCACAAGTTTTAATACAGAAATTAGATACTGTCAATGGAGAGTTTAAATTGTAG

Transcript

Bpl_scaf_23287-6.7

CATCCACGACCTATTGTTGATAAATATACCCACGAGGAAAAATTTGAAAATCAAAAAATTAAGATGAGACTTGCAATGGATGCTGATTCATCATTTGAAGATGAGTTTTATCAAAGACCAAGACGTAAACCAAAAGGTGGTAAACAGAAAAGTATCAGGGGTAACCCAGAAGGGGACAGTATCATGGGAAAAGAGAAGGGAAAGATTAGGGCACCTCCAAACAGTGATAATGACTCTTCCTTTGATGTGGTTTCTCCATCCAAGAAAAGAAAGACTCACATTAATCCAGATCCACTGGAAAATATTCCACGTAAACCAATGACAAAGCGCCATCTACAAATGTACAGTGACACAGACCTTTCATCATTAGATCAAACGGACACTCCAGACACACTCAGTCAGATCAGTTCTATCATGCCAGTATCTGATGTTTCTATGCAGACAACATTCTCACGTATGAGAAAACCAAAAGGAAGGGCAGATGTCACATTAGAAAGAGCAGTACAGAAAGCTAGAGGTCAACCTGATGGTGCAGAAAGGTCATTCCATCAGAAGAAAATCAGTAAGACAACCTTGCCAACACGTTTGTCTACTGTTAGAGAGGCCGCTGAAGGGAGAATTGACAGTTCACATGGTTCACAAGAAGTATTTGCTGAAGGAGAACCAAAATCACCTGGTGTTCAACCTTTTGAAAGAAGAAAATCTATTAAGGTAAAGCTTAAGCGAGCTGCTAGTACTGCTGCTGGACGGTTAAAGTCATTGAAGGGAAAGAAAGTACAGCTGAGTGAGAGTAGACTGATAGCAAAACACAAAATGGAGGATTCACAAATAGAAGAAACCTCAGAATCTAAAAAGACAAAATTAAAAGAGTTGACATTCAAAGAAAGGAAGAAAGTAAGAAAGATGTTGAAAAATAACTTTAGTATGATTCAAAGATCCAAAAAGATATGGGAAGAATTAAGGAGACATGATGTGAAGGAGAATAAGAAACAAGAGCTGTGTAAAGAGTTGATGGGATTTGTTAAAGGAAATATGAAAGAGTTTGCATTTGCCCATGACACAGGTAGAGTATTACAGTGCCTTGTACAGTATGGTACCACGGAACAGAAAGATATAGTATTTGAAGAAGTGAAAGATCAAATCTGTTTGATGGCCAAATCCAAGTTTGCAAAATATCTGGTTAAGAAGTTACTAGTCTATGGATCTAAGCACCATAAAAACCATGTATTCAAGAGTTTCCATGGAAATGTCAGAAAACTAGTCAGACACAGGGAAGCATCAGATCTTGTAGAATTTGCATATAATGAATATGCAAATGCACCTCAGAGACTGTCACTTTTAGAAGATTTTTATGGGCCAAGTTTTATTTTATTTAAAACCCCAGACATGAGATGCCTGGACCAGATGTTGATGTTACAACCAGATAAGAAGGATATGATTCTGAGTAACATGAAGGAGGCTTTACTTCCTCTTATTGACAAGTCAATACTTGTTCATTCAATGGTGCACAGAGTTTTCTTTGAGTTTTTTGTTCATGCCTCAGATAAGATGAGATCAGAGATGATAGAAGCATTACGAGATTCTTTAAATCATATGTTACATACAAGAGACGGATCCAGAGTAGCTATGTACTGTTTCTGGTATGGAAATGCTAAGGATAGAAAGATAATGATAAAGAGTATGAAGACACATGTGGTAAAAATATGTACAGAAGAGTATCCACATCTTGTTATGTTAGCCATGTTTGATGCTGTAGATGATACAAAACTGGTACAGAAAGCTATATTAGAGGAAATTATTAAAAATATTGAAACTATAGTAAAGAACCAGTATGGGAAGAAAGTTCTGCTGTATTTATTGAGTCCCAGGGATCCACATCACTTCCACCCAGATGTTGTCAAGATATTACAAGAGGCAGATCTTAGTACAACCAGTAAGAAACAGAAGTCCATTCGTCAGAGAGAACTGTTAGAGTATGTATCACCACCATTATTACAGTATATAGCAGAACATGCTAGAGAACTAGTGATGGATAACGCTTCTTTGTTGTTGACGTCAGCTACAATAAAACATGCTTTAGGAGATCCTACTGAAGCTATGAAAGCTATAGCAAAGATTGCTGCTGAGCCATTTGTTGCTGGAAGTTTACAAAATATGCACATAGTAGAGCATACTGCTGGTCATATTGCTCTGAAACAACTGATACAGAATGACAAAGAAAGGATCCACTCAGGCAAATCTGATCTAGTTACAGCACAGTTAGTTGGCATTCGTAAAGCACTAAAGAAAATGACATTTAAAGGAGCACAAGTTTTAATACAGAAATTAGATACTGTCAATGGAGAGTTTAAATTGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08144	CPL	CPL (NUC119) domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001313	Repeat	Pumilio RNA-binding repeat	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR012959	Domain	CPL domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR033133	Domain	Pumilio homology domain	Interproscan
IPR040059	Family	Pumilio homologue 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13389	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14844	PUF6; pumilio homology domain family member 6	-	Messenger RNA biogenesis	ko03019	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_23287-6.7 global RNA-seq network