Gene detail

Detailed information of Bpl_scaf_21658-3.20 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_21658-3.20	NADH DEHYDROGENASE	Bpl_scaf_21658	377666	388197	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_21658-3.20

ATGGATAAAGAGCATAACATATGGATGGAAAGGACCTTTGAGCTTGCTGAGGAAGCGCTAAAATGTGGAGAGGTTCCAGTGGGTTGCCTGCTAGTACATGATGGACAGGAAATCGCTGTTGGGAAAAATGAAGTTAATGAAACTAAAAATGCAACAAGACATGCAGAAATAGTCGCTATTGATAAAGTTCTGAAATATTGTGAAGAAAATGGGATAGATTCTAAAACTGTATTTCGGACATGTGTATTGTATGTAACTGTTGAACCGTGTATCATGTGTACTGGATCGCTTCGACAAATGGAAATACCGTTAGTTATATATGGTTGTGCTAACGAGAGATTCGGTGGATGTGGGTCAATCTTGTCTGTTCATAGCGATGATTTACCAAGTCTAGGACCACCATTACAGTGTATACGTGGTGCCATGGCAGACAGAGCAGTAAATTTACTGAAAGATTTTTACAGGGGAGAGAACCCAAATGCACCAGAAATACACAACATGGCTTTAAGACAGTTAAGACAGTTGGTAAGCCGAGGAAAATCTAATGCTAATATGATTGGAGATTTGACAAGTAACGTAGAAAAACGTGAAAAACTTGTGATTCTGGGAACAGGTTGGGGTAGCTACAGTGTGTTGAAGACTATAGACAAAAACAAATTTGATGTGATTGTTGTCAGTCCAAGGAACCATTTCTTGTTTACACCATTATTGTGTAGTACCACAGTGGGAACCTTAGAATTTAGGTCAGTAATAGAACCGATTAGGAACACCATATTTCGTCAACCAGATCATTTCCATTTGTCATATGCAACAAAGTTGGATACAGCTAATAAGAAAATTTATTGTGAAAGTGTCTTAAAATCAGATCTGAAATACGAAATAGACTATGACAAACTAGTGATAGGTGTTGGAGCACTAAGTAACACCTTTAATGTACCTGGAGTACAACAACATGCATTCTTTTTAAAGGAAATAGCTGATGCAAGAAGAATACGTAACAGATTACTACATAATGTTGAACTGTCAGTACAACATGGGATAGACGAACAGGAAGGCAAAAGATTGTTACACACTGTAATTGTAGGAGGGGGTCCCACAGGGGTGGAGTTTGGTGCTGAACTGTATGACTTTGTAGAACAGGATGTATCACGACTTTATAGACAGAAGAAAACACAGGTTAATGTAACTTTGATAGAATCAAATCAAATACTGGCATCGTTTGACGAAAGTCTGAGGAAATATGCCGAGAAGAAAATCAAAGAAAGGGATAGATTTAGTCTTGTAAAATCAACTGTTACAGAAGTAAAGGAAGATTGTGTAATACTAAACAATGGGGAGACAATCCCATGTGGTTTAGTTGTATGGAGTGGCGGTGTAGCACCTAGACAGTTCATTAAAGACATACAATTACCAAAAAATAAACAAGGACAGATAATAACAGATAAATATCTACATGTGTTAGGAGATGATAAGAAAAGTGTGTTTGCTATAGGAGATTGTGCCGATATACAAGATATGCCATTACCATGTACAGCTCAGGTTGCAGAAAGATCTGGAAGATATCTGGCAAAAATGTTTAATTTTGGTAAAGAATTTGCAGAACCATTTGAATTTCAAAGCATGGGAATGTTAGCATATATTGGCAAATATCAGGCATTAACTGATGTTAAACAAGTCAAAATGCAAGGTTTTACATCCTGGTTGGTATGGCGATCGGCCTATTTAACCCGGTTAGGAAGTTGGAGACTTAGAATGCAGGTTCCGCTTGATTGGACAAAAACATTACTTTATGGCAGAGATATATCTAGATTTGAATAACTACAACAAAAACGTAAATGTGATCTAGATTTGAATAACTATTAAAAAAAAAAATGTAAAATATGATCTAGTTTGAATGATAACTAATACAAAAATATATAAATATTGACTTGACAGAAAATGCATTTGATTTGTTACCTTTTGATTATCTCAGTAGATGTTCATATTCTTTTATTTTGTCTAACTTATAGATTTACAATTTTTACCTCTTTTTTTTTGCAAATATAATCCAATGAAGATAAAGAAAATTGTTGTAATAATTTATTAGAAAATATTTTGTAATACATAGAATGTCTTGATAATACACTTCTACCTCGTTAAAGGGCTGTCGTGGTCATGATCGTATGGTAGTTCGATTTACAACTACCTGTGCAATCAGTGCCTATCACTACTACAGTTTAGAATTTGAATCCTGCTCAGGCGAGGTGTACTCAATACATTATGTTATAAAGTTTGTCAGTGACTTACGACAGTTCAGTGGTTTTCTCTGGGTACTCCGGTTTCCTCCACCAATAAAACTGTCCGCCACGATATAACTGAAATATTGTAGAAAATGGCATTAAACATGATAGCTCCCACACCTTTTACCTTGTTATATTACCACTTTTTGGACCACACAATTTGTTTTCTCAGTAAGCCAGGGTGGCAGTAATCAGGGAAGGCTGATCTGGACAACTCAACTGTCTTCTGAATGAATAATATGTCATGATTGCGGTTGTAGAGGAATGCTTAATTTATGTAAATAAGAATATTTATCATGTTGAAAAAAAAAGAAAAAAAAAACATTTGAAGAATATTAGTTGTAAGATATCCAGTTCTGTCATTGAACTTTCAATTTCAATCAATTTGATTTCGATTGAATGGTTATTTCAATATCAATTTGCATAGCAACTTAACTCATGTTTACTTCCTCAAATCACTGTCTTCATCAGAAGCAATGTTATTAACAGCATATCTCCCTAGCTTTAGCAAAGCAAATCTTCTGCTCTAGGACCTGATAATTAGAAGAATCAAGTATTATTTCTGGATGTTTACAGACAAAACTCCATGAAATGATCTTTATTTGTTAGATTGCTTAATATTGATATACATTTGTACATGTAGTATGTTGTATCCCATATGTTAAGTTTTCATGTACAGCATGTGGACAAAAGTGATTCCATTTCCGCCATCTTCCCTATATATTTAATATAAAACCAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07992	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan
PF14437	MafB19-deam	MafB19-like deaminase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002125	Domain	Cytidine and deoxycytidylate deaminase domain	Interproscan
IPR016192	Binding_site	APOBEC/CMP deaminase, zinc-binding	Interproscan
IPR016193	Homologous_superfamily	Cytidine deaminase-like	Interproscan
IPR023753	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR028883	Family	tRNA-specific adenosine deaminase	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR045024	Family	Alternative NADH dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43706	NADH DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002100	Biological Process	tRNA wobble adenosine to inosine editing	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003954	Molecular Function	NADH dehydrogenase activity	Interproscan
GO:0006116	Biological Process	NADH oxidation	Interproscan
GO:0008251	Molecular Function	tRNA-specific adenosine deaminase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_21658-3.20 global RNA-seq network