Gene detail

Detailed information of Bpl_scaf_21273-1.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_21273-1.7	IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS	Bpl_scaf_21273	93244	101599	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_21273-1.7

Transcript

Bpl_scaf_21273-1.7

ATGATCAAATTCCTGCCATATACAGTTTTCACCTATCTCACGGAATTAAAGACTTTGTATCTGAATGGTAACAAGTTAAAAAGAATGCCAAGAGATGTACTTAAGCCTCTCAAACATCTGCAGGTGCTTGATCTGTCTCGTAATAATATTTCAGATTTCTATGATGATATGTTCGATCATAATATCGACCTTCAAGAACTCCTTCTAAATGGAAATAGGCTTTGGACTATTCGACCAAGATGGTTCCAAAATTTATATGCGCTTAAAACTCTTTCACTTAGAGGCAATGCCATCGTCAGTGTTCCTACAGACTGTTTCAGTAACTTATACAACTTGGAGGAATTGCTACTTTCAGCCAATCATATTAAAGAAATGGAATTCGGTGCTTTCCGTAATTTACGAGATTTGAAAAGCATAGATTTATCAACCAATGATATTACGGAAATCCAATCACTGCATTTGTCTGAACTCGATTCACTATCAGAATTATTTTTGGCAAACAACAAAATAGTTAAAATTCAAAATGGGACGTTCGAATTTGTGAAATATTTGAAAAGATTGGATTTATCAAGAAATGACATAAGTAATGTAGAGACAGCGTCATTTAAAGGTTTACGCCAACTTAAAGCCTTGGTTCTGTCACATAATAAGATGATAAGCTTTAAAAAGGGGATCATATTTGGAGTAGAAAACTTAGAAGATTGTCTCCTCGATCACAACTTCATAGGAAGTATCGATGACGGCGCTTTTATGACATCTAGTGCCGACCGTCTCTCGAAGATGAAAAATCTTAACTTGGAACATAACAACATACGAAAGATTGAAGCTGAAACATTTAAGGGTGTTCCGCGTCTAAAATCATTAAAACTTGGGAATAATAATATTCGTAAAATACATCCACAGGCATTGACGGATTTATCTTACCTTGAAACACTGACTCTGAACAACAACAAGATAAGGAAGCTTAACAATGGCGTGTTTTCTAATCTCAAAAAATTATACTCTATTGATTTATCGAGAAATAGAATTCGATTAATTGGTGAAGATATGTTTCTTGGACTAGACAAACTAGAGGACTTACTCATTTCTGGAAATAAGCTAAACTCAGTTCACAAACTAGCATTCAGAGCATTACCTAATTTAAACTCTTTGGATTTAAAAGAAAATCGACTAGTCAGTTTTAATTTTTCGACCGTTACGAATATGCCACAATTAACAATTATGGATTTAAGCAAGAACCATTTGTTCTGGGTGGACATCCCGTCAACAGCATACTTACGTTTAAAGGATTTACTACTCTCTGACAACAGTTTACAATCGTTAAGTTCAAACATTGACAATATTATGGGGAGGTCATCAATAATCTCGTTGATGAACAATCCTTGGACATGTGACTGTCAACTGAAATGGGTATTGGAACCCAGTAAAAATTTTACAGAATTAACAGCAGAAGAACTCACCTGTGACAAAAAGAACAATACAGCAAGTAATGGTGTTACTCTTCAATGTAAAGATGACGTGTTCAGTAAAAGACCATTGCCAGTAAAAAAATCAATTGGAAAAGAATTGATGAAGAAGCATGCTACTATTTATAGGAATCGTGGTGATCACGTGACGGATGGCGTCATGCTATCGAAAAACTGGGCATTGGTACCAGCAGGTGCGCTCAAATATCTGCCAATCAAAAATCTGCACGTGAAAATTGGGCGTGCCAAAACAAGTTTCAAAATAGCCACCGTAGTGGAACACCCATTGTTATCATTAGGAATGCAAAAATATAACGTTGCTTTGGTCAAGTTATACAAAAAACGATCACCAGAAATAAAGAATCAGTGTATTATTACAGAAACACAATTTAGATCGATTTCAAAGATTTTACCAGTATTTTCCGTTTCTATCAGAACAGACGGCAAAAGACCAAGAACAAAGTTAAAAATCAGAAAAGGGAAATTAAATTACAATTGCGCCAATGACAAGGACTACATATGTGGTATAATAAAAGGTTATAAAAATGATGTCTTGTCTATAAACGGAGCACCACTTTATATTGGTCACTCCAGTAATCTCCGTCTAGCTGGACTTGGGATTCAGTCATGGAGCAATCAGAAAGGCCAGTATTACTTCATTCCGCTTTGGACTATTTCCGAATGGATTGACGGTGTAATAGCTGAGCATAAGAAGAAATGTATTATTGGCAAAGATGGCAAATTTGTGTGCAAAGGCTTAGATTTACCACTTGCAAACGAACTTTATATCAAATTGCAAAAAACAGAACAACATTGACATTCATTTCGTCAACCATGACAATACATGTTTAAAGTCGCACGAATATAGTATGGAGTGTCAAGTTATCTTGAATGTCAGAATCAAGGCTCCCTATAACAACTTCCGGTGCGATTTATTTAACTGACTGCAAAACCTTCTTTTTTTCACATTTGAAAATATGCTTAGAATTTTAAAAGTGGGAAAATTTCTAAAAGAAGCTTGAAGTTCTTTTCTGCACAAGTTGATTGCATATAGGAATTTGAACCTGCAATGTATGAATGTGAACAAAATGTAGTAAAGCAAATCATGATACATCATACAGTCTGGTTTATAAACCTAAAATGCGCTGAAAATAAGGGATTTGTATTGAGGACATAAACAAAACGTGAACCATTGTAAAGACATAGTCATACACAAGAAATCTTCATATTTCAAATTAATGCTACGAAGTTTGGTTTTATGCATACTATTCATATCTAAAATATTACCAAAAAACATCCTAAAACATTTATGGTAATACCAATTATTGCATTTACATAGAGTTAAATTCCCAATAATCTCTAACCGGAAGTTACAGGGTTATTTATTGACGTCATAATGCAATTTAACCGGTAGATCGTCTCGAAATGGGATACAGTTGTATTGTTTATTGCAGCACGAACACCCAAGATTGTCATTAAAATGAATATATATAGCCGTATTAGAATGGGAATCATTTATAAAACTATGTTTAATAAGATATTCTACATTGGTCATATTTGATTAGGAAGTTATAGTAAATATAATGCCATGTCCATCTCATGAATATGCAAGAAGCGATTGGTTGAAACAATTACGTAGAATAACGATACATTGTCATATGCTTGTGATTCATCACTTACTAAAACAAAACAACTGTTGTCAAATATGTGATCATTATATGAGAAACATTTCCGACTTAGGGAAAATAAAAGCGAAAGAGTCAAAGATTTTACATTTAAATAATTTCGTACCTTTTCGTAATTTTTTGAGAAGTGACGTCGGATCTGTTTATAAATGTGTTGTACTCATTAATATTGTATTATTTACTACAGATATGAGTAATCAGTTACGAATGTTTTCTGATAAGTTCTCGTCACAGTATGTCTGATTTTATGTCTAACCGTCTTTCAAATACATGTATATATTATCATGATTGTTGATATAAGTTCCTGTTTTTTATGTAAAATATTATGTTTTTGTTATGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12799	LRR_4	Leucine Rich repeats (2 copies)	Repeat	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR009003	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR025875	Repeat	Leucine rich repeat 4	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR043504	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24366	IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17256	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	-	Growth hormone synthesis, secretion and action	ko04935	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_21273-1.7 global RNA-seq network