Gene detail

Detailed information of Bpl_scaf_20376-4.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_20376-4.5	ARP2/3 COMPLEX 34 KDA SUBUNIT	Bpl_scaf_20376	381431	402055	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_20376-4.5

CAGCGATTCTTCTTCAAAATCCAGCAGACAAGACAAGCATTTATATGCGTCTTGGAAAGCACCCGATCATCACCGGATGTATTCATGTTGATCCCTCATGTAGTCCATGTAGTGACCCCTAAATGAGCGTTTAAAGATCTCCTACCCAGCGACTAGTAAAAAGCTGATAGAATATAGGGAGCAACTACGGAGATTTAATTTTAATTAGCTTTACCTTATCTGATATTGTATGGGAAAACAATTATTTATTAAAGATTCGTGCAATCGGGTTCCACTGACAGTTTTTAGCCATGCACGTACTTCTAATTAACAGCCAATCAAATATCGTGTTATGAGACACAGGCGGAAATAAATGAAGAAGCTTCCGGTCGGCGAAAAAAAAAATCACACCCAGCGTAAACTCTGCGGACTTTATATGCTAACATGATTTTATTAGAAATACACAACAGAATTGTCGAGGATACATTAATTGGGAGATTTAGAAGCGCTAAAGAAGGAAACAAGCCAGAATCCATAGATATTACTGTTGCAGATTTTGATGGAGTTTTATATCACATGTCAAATCCAGAGGGAGACAAAAGCAAGATCTTGGTTAGCATTTCTCTGAAGTTTTACAAAGATTTAAAAGAACATGGAGCTGATGATTTAATAAAAAGGGAATATGGAGATTTTATTACTACAGCAGAAGATGGCTATGATGTTTCTTTAGTATACAGTCTGGACAAAATCCCAGCTGATTTTGAAGAAAATGCCAAGAAAGCTGCATTGTTGAAAAGGAATTGCTTTGCATCAGTGTTTGAAAAATATTTTGAATTCCAAGTGAAAGGTTCAACTGGAAATAAAAGAGCTGTCATTCAATACAGAGATGATGAAACAATGTATGTTGAAGCACAAAAAGATAGAGTGACCGTTATATTTAGCACAGTGTTTAAGGATGATGACGATGTTGTTATAGGAAAATTATTTATGCAGGAATTTAAAGAAGGGAGAAGAAATTATCAACAGGCTCCACAGGTGTTATTTAGTCACAAGGAACCCCCCATGGAATTACAAGGCACAGATGCTAAAGAAGGAGATAATGTCGGATATATTACATTTGTTTTGTTTCCACGTCACACTGGTGCTGCTGCTAAAGATAATACAATCAACCTGATTCACACACTGAGAGATTACTTACACTACCACATTAAATGTTCTAAGGCTTATATACATTCAAGAATGAGGGCAAAAACATCAGATTTCCTTAAAGTGTTAAATAGAGCACGACCAGATGAACAGAAGGAAAAGAAAACAATCAGTGGAAAGACATTTAAAATGAATTGATGAGATCAAAGACATTAAAGGTTAAAATAACGTATTGTGCAGATCTATAACGCAATGTATAACACGACATCAGATGGATAAATAACATTACTTATATCGTATGACAACTGATTTAACAACTTGTTGGCTGGACCAATCATATGCTATTCCTGGATTCTTTGGAGAAAAAAAATTGCAGATGATTTCCAAAGTGATGTGGTCTCCAGTGCATGATTTAAAATTGATTATAAAGTTATTCATCATATCTTGGAATTAATATGTTAGACTTGGATCAGCGTCCTAACTCAAATCGACGTCCAATCCTCAAATCGATTTGAGGATTGGATGTCGATTAGAGGCTTCAGGTTGAGTTTTACAGATATAAAATTTTTCATTAAGAAATCTGTACAGTCTCAAAAGTAAATTATATATAAAATTGTTGGGTGTAAGAAAAAAATATGGTTGATAAGGTATAAGTTAAGTTTTACATGTACAAAATGTATATTGAATTAATAAGCCAAAGGGAAACAATTGATATTAATTTCCGATGGCAACTTTTAAAGCATTTTTTTTTTTAAGTTGAAAAAAAAATTTGATTATAATATTGACCAAACTTGTGTTTATTATTTGTATAACCATTGATTTGTTGACTTTAACACTGATATTAAGTGCCAGAACAAATTACACTGTTGATGTATTAATATTTATAAATAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04045	P34-Arc	Arp2/3 complex, 34 kD subunit p34-Arc	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007188	Family	Actin-related protein 2/3 complex subunit 2	Interproscan
IPR034666	Homologous_superfamily	Arp2/3 complex subunit 2/4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12058	ARP2/3 COMPLEX 34 KDA SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005885	Cellular Component	Arp2/3 protein complex	Interproscan
GO:0015629	Cellular Component	actin cytoskeleton	Interproscan
GO:0030041	Biological Process	actin filament polymerization	Interproscan
GO:0034314	Biological Process	Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05758	ARPC2; actin related protein 2/3 complex, subunit 2	-	Endocytosis	ko04144	PMID: 28812709
			Regulation of actin cytoskeleton	ko04810	PMID: 28812709
			Fc gamma R-mediated phagocytosis	ko04666	PMID: 28812709
			Pathogenic Escherichia coli infection	ko05130	PMID: 28812709
			Salmonella infection	ko05132	PMID: 28812709
			Shigellosis	ko05131	PMID: 28812709
			Bacterial invasion of epithelial cells	ko05100	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_20376-4.5 global RNA-seq network