Gene detail

Detailed information of Bpl_scaf_19010-14.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_19010-14.5	SUPERKILLER 3 PROTEIN-RELATED	Bpl_scaf_19010	1350457	1394853	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_19010-14.5

ATGGATGTTAAAGAAGCAAAGACGGCATTGAAAAATGCAAGGGAATGTATCAGAGAAAAACAGTTTAAAGAGGCACTAAAGCATTGCAAGTCAGTATTGGCACAGGACAAGAACAATTACAATGCCTTGGTGTTTGTTGGTGTTGCTGCTGAAGGATTGGAACAAGTTGATCAGGCTGAAAAGGCATACAAAAGGGCAACCGAAGCTGCCCCAAGTCAAGTTTTAGCATGGCAGGGACTTTGTGGATTCTATGAGAAGCATCCTGAACATCAATCTGAACTGGTAAATGTGTATCAAAAACTACTGGAACTTTTTGATGGGGATGAAGAAAAGAAAAATGAGATCGTGTGGAAATTAGCTGATTTGGATGTAAAACTTGGAGCCATTTCAATGGCTATCCCAATTTATGAAAATTTAATACAAGTTGAAAAGGTTGACGAGAAGAAGGAGAAACTTTTGTACAGACTGGAAGAGATATTAAGAAATGAGAAATCTCTGTCAGCAGAATGGAAATCATTGTATATCTCAACCTGTGATATGTTGTTTGAGTTAGACCATGTAGAGTTTATAGATACTGAAGCTGTACTGAAGTTTTATGTACGATGCATGCTCCAGATTCAATATATTGGGAGTAAGCTTGAATTCAAATGTAGAACTCTCCAACTGAAGTTCCCAGATATCGCCTACTCGACAGAAATGTTGATCGTCATGACGATGGATAAGCAGATTGGAGATAAATTTCCAGATGTAGATCCCAATTTAGATGAATACATTTGTAAAGTATCAAAACTTGCTCCTGACAGTAAATACTTGTTAGCTGGTCAAGGTTTTACACAACTTTGTAACAAGAAATTTACACAAGCAAGGGATTGTTTTGCCAGAGCTGTTGATCAACTTCCAAAAGTTACTTGTGTGCATTATTATCATGCTCTTGTTCTCAAACATCTTCATGACTTTAGTGGAGCAGAAACATCATGTCAGACATGTTTGAAGACATTAGAAAGGAAAGACAGAGTTTTCACTGCAATAGGTTCTATATCTAAAACAGTTATGTACCTTCAAGCTGAAATGATGTGTGGAATAGGGACAGAGTCTTCTCTTCATTCTGCTCTGGATATCATTCAACAGATATCAGAAGATTTACCCATTCAAGTGCTGAAAGGTCATATTTATATAAAACTGGAGGACTTGGATTTTGCTGAGAACTGTGTAGAAGGAGACAGCCCTGAGATGATGGCATTAAGTGGATGTATACTTTATCATAAGGCTCAGTATGATGAGGCTGTAATAAAGTTAAAGAATAGTATAGAGAATGACTCCACTAATAGCTACTATATGTTATGGTATGCTAAGGCATTGTGGGAAAAATGGAAGACAAGTAAAGACAAGTCTGATATTGAAACTTGTTATACATCTTTGTTAAAGTCAGCCAAGTTAGACCCATACAATGCAGAAACATTTCTGTATTTAGGACATTTCTCCTTGAACATCCAAAATGACAGGACAAGGTCAAGGAAATGTTATCAGAAATGTTTTGACCTTGACCCAACATATGAGGAAGCTGGTGCTGCCCTCTGCGATTTATTAACTTTATCAGACCAAGAAGAAGAGGCATATAAATTACTATTGTCAGTAACTTCAAAAGCTAGTGCTGGATGTCATGTCTGGGAGTGTTTAGCTGAAGCTTATTACCACAGAGGAAGTTATACAGCTGCTTTAAAGGCTTTTACAAAAGCCTCAGAGCTTGACCCAGATTCCATTTATTGTTTATATCATATTGCTGCTATAAAACAAACATTAGGGCTGTTTACAGAATCCATAGATGAATATAAGTTAATTCTCAGCAGAGATTCTGAATATGTCCCTGCTTTAAAAGGAATTGGAGAAACTTACCTTCTTTTAGCCAAACATCACTTCAGTCTGTTTTTTAATGGTAAAGCCAGAGATGAATGTCAGGAGGCTTTGGTATATCTCACTAGGGCAGCTACACACAGACCAGATATGTCATGTTTGTGGAAGTTTATGGGAGATGCTTGTACTATTGTTCATCCAATGACTAAAGAAACATTTAGAATGGAAGTTCCAAAGAAGTTATTAGAGAAAAGTGGCCAAGAATCAACATCACTGTCTTTGATACAGACACTTGAACTTGGAGCAAGGTGTTATGGCAAAGCTTTGAAACCTCTTCCAGAGTGTGCCTCACTTTGGCATGACCTTGGGTTCAACTTATTCTACCAATCACAACAATGTACAGATGATCACATGACTCAAATGGCAGAGAAATCTGTGAATGCCTTAAAGAAAGCTTTATCATTGGACAGCACAAACTATCTACATTGGAATGCTCTAGGAATAGTTTCATGTTCCAAAGGTGCTAAAAATCCATCGCTGGCTCAACATTGTTTTATCCAGTCCATCAAAGCTGAAGCAAGTAATCATGTGGCATGGACTAACTTAGCAACACTTTATCTGACCAATGGTAACATTCATCTTGCCCATGAAGCCTTTAAGATGGCACAACGTTTAGAACCATCGTATGTTGCAGCTTGGATTGGACAAGCATTAATAGCTGAGACAGTAGGAGATGAGGATGCTATGGACCTGTTTAGACATACTACTGAGCTGTCAACTCATGTTGAGGGAGCCAGTGGTTATGGGAGTTGGGTTTGTACAATGTTACAAGATGAGTCAAAACATAACACAGACTTGTTTCGTTACTCAATACAACAAATGGCTGCTGTGCCTGCTGCATCTACAGCTCTTGGGAAATATCTAGATCGTATTAAGACTAATGCTACAGCATATAACATGTATGGAGTGCTACTAGAACAACAAGGACTTCACAGATCTGCAGTCGAAGCTTTCAAAAGTGCAATAAATCTGGATAATTGCCAAGACAAATCTAAGGTTAGAGTGAATCTGGCAAGAGTTCTATGTAAACTACAGCAATTTGAAGAAGCCATGTTACAGTATGATCAAGTTACCATGCCAACAACCTTTAATGACCTTTGTAGCCTTGGTTATGCATGTTACAAGTCAGGAAAATACAAAGAAAGTTACCAAGCATATCAACAAGCATCAGATTTAGCAACAATTGACCATGAAAAATCACATGTATGTACAGCTCTAGGTATGGTGGCATACAAGTTTGGAGATTTTGAGGGAGCTAAAGCTATTCTTCTTCAGAGTTCTCAGCTAACGCCACCATCACTGAATGGTTTGAAATCTCTCTGTGCTCTAGGAATCACTTTATCAGACAACACCCTTACAATGGCTGTTCTTCAAGAACTCTTCAGTCAAGGAGATGCAAATACTCAAGTTGACGTTTCTCATCTGATGACAATATCACACTGTTTATTAGAGAACAATTTTCAAGGAGCCAAAACCTACATTCAGCAGTGTATTCACAAAAATCCTAATCAGTCATCACTATGGAAACTGTTGTCAAGGTTACTGCTCAGACATTACCCAGAATGCTTAGCATCAGTAGCTGCCAACTGTGCAGAATGTGCATACAGGCTGGATCCTTTCATGCATAATATACAAAATCTAGTTACTGCTAGTCTACTGAGATCAACTACAACATCTGGTACCAGACTTGTCAAGTCAGCTGTAAAAGCTTTACATATTCAGCCTGATATACATGAAAATTGGAAGAATCTGGTATCCTCAATAGATTTTCAGTGTAAGAATGACCCAGGAGAAGTGAACTGTTGGAATGAACTGAGAGAATCTTACAACAAGTGGTTTACAAAAATAGAAGAATAA

Transcript

Bpl_scaf_19010-14.5

GTACTGGTACGTTTTGTTACCAGTCACAGTAGAATCCGAAAATGTGAAAGTAGCATTGAAGAACACTGGCACTGTCACCGTGTTTATTATATTCCGCTTTTGAAAGATAATTAATCTGATGGATGTTAAAGAAGCAAAGACGGCATTGAAAAATGCAAGGGAATGTATCAGAGAAAAACAGTTTAAAGAGGCACTAAAGCATTGCAAGTCAGTATTGGCACAGGACAAGAACAATTACAATGCCTTGGTGTTTGTTGGTGTTGCTGCTGAAGGATTGGAACAAGTTGATCAGGCTGAAAAGGCATACAAAAGGGCAACCGAAGCTGCCCCAAGTCAAGTTTTAGCATGGCAGGGACTTTGTGGATTCTATGAGAAGCATCCTGAACATCAATCTGAACTGGTAAATGTGTATCAAAAACTACTGGAACTTTTTGATGGGGATGAAGAAAAGAAAAATGAGATCGTGTGGAAATTAGCTGATTTGGATGTAAAACTTGGAGCCATTTCAATGGCTATCCCAATTTATGAAAATTTAATACAAGTTGAAAAGGTTGACGAGAAGAAGGAGAAACTTTTGTACAGACTGGAAGAGATATTAAGAAATGAGAAATCTCTGTCAGCAGAATGGAAATCATTGTATATCTCAACCTGTGATATGTTGTTTGAGTTAGACCATGTAGAGTTTATAGATACTGAAGCTGTACTGAAGTTTTATGTACGATGCATGCTCCAGATTCAATATATTGGGAGTAAGCTTGAATTCAAATGTAGAACTCTCCAACTGAAGTTCCCAGATATCGCCTACTCGACAGAAATGTTGATCGTCATGACGATGGATAAGCAGATTGGAGATAAATTTCCAGATGTAGATCCCAATTTAGATGAATACATTTGTAAAGTATCAAAACTTGCTCCTGACAGTAAATACTTGTTAGCTGGTCAAGGTTTTACACAACTTTGTAACAAGAAATTTACACAAGCAAGGGATTGTTTTGCCAGAGCTGTTGATCAACTTCCAAAAGTTACTTGTGTGCATTATTATCATGCTCTTGTTCTCAAACATCTTCATGACTTTAGTGGAGCAGAAACATCATGTCAGACATGTTTGAAGACATTAGAAAGGAAAGACAGAGTTTTCACTGCAATAGGTTCTATATCTAAAACAGTTATGTACCTTCAAGCTGAAATGATGTGTGGAATAGGGACAGAGTCTTCTCTTCATTCTGCTCTGGATATCATTCAACAGATATCAGAAGATTTACCCATTCAAGTGCTGAAAGGTCATATTTATATAAAACTGGAGGACTTGGATTTTGCTGAGAACTGTGTAGAAGGAGACAGCCCTGAGATGATGGCATTAAGTGGATGTATACTTTATCATAAGGCTCAGTATGATGAGGCTGTAATAAAGTTAAAGAATAGTATAGAGAATGACTCCACTAATAGCTACTATATGTTATGGTATGCTAAGGCATTGTGGGAAAAATGGAAGACAAGTAAAGACAAGTCTGATATTGAAACTTGTTATACATCTTTGTTAAAGTCAGCCAAGTTAGACCCATACAATGCAGAAACATTTCTGTATTTAGGACATTTCTCCTTGAACATCCAAAATGACAGGACAAGGTCAAGGAAATGTTATCAGAAATGTTTTGACCTTGACCCAACATATGAGGAAGCTGGTGCTGCCCTCTGCGATTTATTAACTTTATCAGACCAAGAAGAAGAGGCATATAAATTACTATTGTCAGTAACTTCAAAAGCTAGTGCTGGATGTCATGTCTGGGAGTGTTTAGCTGAAGCTTATTACCACAGAGGAAGTTATACAGCTGCTTTAAAGGCTTTTACAAAAGCCTCAGAGCTTGACCCAGATTCCATTTATTGTTTATATCATATTGCTGCTATAAAACAAACATTAGGGCTGTTTACAGAATCCATAGATGAATATAAGTTAATTCTCAGCAGAGATTCTGAATATGTCCCTGCTTTAAAAGGAATTGGAGAAACTTACCTTCTTTTAGCCAAACATCACTTCAGTCTGTTTTTTAATGGTAAAGCCAGAGATGAATGTCAGGAGGCTTTGGTATATCTCACTAGGGCAGCTACACACAGACCAGATATGTCATGTTTGTGGAAGTTTATGGGAGATGCTTGTACTATTGTTCATCCAATGACTAAAGAAACATTTAGAATGGAAGTTCCAAAGAAGTTATTAGAGAAAAGTGGCCAAGAATCAACATCACTGTCTTTGATACAGACACTTGAACTTGGAGCAAGGTGTTATGGCAAAGCTTTGAAACCTCTTCCAGAGTGTGCCTCACTTTGGCATGACCTTGGGTTCAACTTATTCTACCAATCACAACAATGTACAGATGATCACATGACTCAAATGGCAGAGAAATCTGTGAATGCCTTAAAGAAAGCTTTATCATTGGACAGCACAAACTATCTACATTGGAATGCTCTAGGAATAGTTTCATGTTCCAAAGGTGCTAAAAATCCATCGCTGGCTCAACATTGTTTTATCCAGTCCATCAAAGCTGAAGCAAGTAATCATGTGGCATGGACTAACTTAGCAACACTTTATCTGACCAATGGTAACATTCATCTTGCCCATGAAGCCTTTAAGATGGCACAACGTTTAGAACCATCGTATGTTGCAGCTTGGATTGGACAAGCATTAATAGCTGAGACAGTAGGAGATGAGGATGCTATGGACCTGTTTAGACATACTACTGAGCTGTCAACTCATGTTGAGGGAGCCAGTGGTTATGGGAGTTGGGTTTGTACAATGTTACAAGATGAGTCAAAACATAACACAGACTTGTTTCGTTACTCAATACAACAAATGGCTGCTGTGCCTGCTGCATCTACAGCTCTTGGGAAATATCTAGATCGTATTAAGACTAATGCTACAGCATATAACATGTATGGAGTGCTACTAGAACAACAAGGACTTCACAGATCTGCAGTCGAAGCTTTCAAAAGTGCAATAAATCTGGATAATTGCCAAGACAAATCTAAGGTTAGAGTGAATCTGGCAAGAGTTCTATGTAAACTACAGCAATTTGAAGAAGCCATGTTACAGTATGATCAAGTTACCATGCCAACAACCTTTAATGACCTTTGTAGCCTTGGTTATGCATGTTACAAGTCAGGAAAATACAAAGAAAGTTACCAAGCATATCAACAAGCATCAGATTTAGCAACAATTGACCATGAAAAATCACATGTATGTACAGCTCTAGGTATGGTGGCATACAAGTTTGGAGATTTTGAGGGAGCTAAAGCTATTCTTCTTCAGAGTTCTCAGCTAACGCCACCATCACTGAATGGTTTGAAATCTCTCTGTGCTCTAGGAATCACTTTATCAGACAACACCCTTACAATGGCTGTTCTTCAAGAACTCTTCAGTCAAGGAGATGCAAATACTCAAGTTGACGTTTCTCATCTGATGACAATATCACACTGTTTATTAGAGAACAATTTTCAAGGAGCCAAAACCTACATTCAGCAGTGTATTCACAAAAATCCTAATCAGTCATCACTATGGAAACTGTTGTCAAGGTTACTGCTCAGACATTACCCAGAATGCTTAGCATCAGTAGCTGCCAACTGTGCAGAATGTGCATACAGGCTGGATCCTTTCATGCATAATATACAAAATCTAGTTACTGCTAGTCTACTGAGATCAACTACAACATCTGGTACCAGACTTGTCAAGTCAGCTGTAAAAGCTTTACATATTCAGCCTGATATACATGAAAATTGGAAGAATCTGGTATCCTCAATAGATTTTCAGTGTAAGAATGACCCAGGAGAAGTGAACTGTTGGAATGAACTGAGAGAATCTTACAACAAGTGGTTTACAAAAATAGAAGAATAAATTATTGACATGAAACTAAAATGTAATAAAAAAATATCTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07719	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF14559	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013105	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR039226	Family	Ski3/TTC37	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15704	SUPERKILLER 3 PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006401	Biological Process	RNA catabolic process	Interproscan
GO:0034427	Biological Process	obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	Interproscan
GO:0055087	Cellular Component	Ski complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12600	SKI3, TTC37; superkiller protein 3	-	RNA degradation	ko03018	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_19010-14.5 global RNA-seq network