Gene detail

Detailed information of Bpl_scaf_18655-3.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_18655-3.11	MYOTUBULARIN-RELATED	Bpl_scaf_18655	268956	293315	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_18655-3.11

GTTGTCTGCAACTTCCGGTTTATAAAATTATGTTAAATTTTTAGAAGATTTATGAGTATGCGGAAAATGTGCTAATCAGACCTTCATTGAGGAATAGTTAATATTACTACACCAGATAATAAACACAAAAGATGGAGTTTGCGGAATTCATCAAGACCCCAACAGTAGAGAATGTTTGTATGAAAAGACCTTTTATGTCACCAATTACAGGGACACTTTGTATTACCGGTCATCATGTGATTTTATCATCAAGGACAGAACCCCATGAGGAATTATGGTTGTTACACAGTACAATAGACAGCACAGAGAAGAAAATGACACAGACAAATGGGAAATATACCCTGATATTACGATGTAAAGACCTACAAATGTATGAGTTAGAATTCAACAACGGTGATGACTGCTTACATGTAGCCTCTTCTATAGAGAAACTCTCTCATATTGATGATATTAGCCTGAAATACCCATTTTTTTACCGAGCTGGGTTTGAACCGTTAGAAGATGGCTGGCAAGCGTTTCTTCCAGAAAATGAATATACAAGATTTAAGGAGTGCTCAGATGAATGGAGACTTAGCTATGTCAACAAAGATTACAAAGTATGTGCATCATATCCACATGCAGTTATTGTACCGAAGTCTATAGACGATGAGACTATTATAAAATCTTCATATTTCAGACAGAATGGTAGATTTCCTATACTGAGTTATTACCATAGACAAACTAAGACTGTAATGATGAGATGTAGTCAACCACTGACAGGTTTAAATAACAGAAGATGTAAAGAAGATGAGCGATTGGTCAATTCTGTGATGGGGAAGGGCAATAAAGGTTATATCATAGATACAAGGTCACCATCAGCTGCAAAGTCTGCTCAGAGTAAAGGAGGTGGATATGAACCAGAAGTCCACTATCCACAATGGAGAAGGATCCACCAATCTGTAGAAAGACGACCGACGTTCCATGACTCTCTTATAAAACTAATGGAATCATCCTTTGACAACACAAGCAGTATGGATAAATGGCTGTCAAAGTTAGAATCCAGTAATTGGTTATCTCATGTCAAAGATATACTAACATGCGCTTGTATGATAGCCCAGTGTATACACTATGAAGATGCTTCAGTATTAGTGCATGGATCTGAAGGTTATGATACAACACTGCAGGTGACTTCACTGGTCCAGTTAGTACTAGACCATGACTGTAGAACCATTAATGGCTTTGAAGCTTTGGTAGAACGTGAATGGCTACAGGGAGGACATCCATTTGCAGACAGATGTTCTAAGTCAGCATTTGCTATCACTAAGCAAAGGAGTGAATCTCCAGTGTTCCTTCTCTTTCTTGACTGTGTTTGGCAGATATGGCAGCAGTTTCCATGTTCTTTTGAATTTAATGAAGATTTTCTCATCATGCTGTTTGAACATGCATACTCATCTCAGTTTGGAACATTTCTATGTAATAATGAAAAAGAGAGAAAAGAATGTAAATTATCATCAAGAACAGTGTCTCTGTGGACGTACTTGGCTAGACCAGAAGTACTACAAAAATATCTAAATCCTATGTACGAACCTAATCCTACAGTTATATGGCCCTCTGTTGCCCCTCAAAGTTTGATGCTGTGGTCTGCTTTATATCAGAGATCTATAATTGACCAATCAAAACAAAAAGAAGAATGGCAGGAAGTCAGTAAAATTAGAGAATATGACAAAGAATTAAGGTCAAAGGTCATGAAACTAAGAAGACAACTTGTCTCTTTAGAAAGAGAAGCTTTAGGAGTTGGGCTGATATTACCATCAGAACTAGGTGTTGACTGCATGCCAGAATAAGATCAAAAGAATTCAGACAATTCATCATACATTCCATAAAAATAGTTGTGAAACATTGATACAATAAAAATGTATATATGTAGTGAAACCTGTCAAACCCTGAATAAAATGGAAATGTACTGATTTCAATAAAAATATTACATGAATTAAAAAAAAAATTGAAACAAAGTCCATTGTAGGAAATCCCTGTTTATTTAACCTGTATAAACAGAGCACCTGTCTATTCCAAACACAAAATCTGGTCCAAAGGAGGTTCAGTTTAAAATATTTGTGAATACAAATGTGAACATTGATGCAGTTAAACCTGTCTAATGTGACCGTCCCAGGGAACATTGAAATATGGTCACAGGCTTAATACAGGTTTAGTTAATATAAAATGCACTGTGAAGGGAAATTAAAATTAATGTCACATAATACAAGTTATTGCTTAATAGAGGTGGTCATTAAAGCAGGTTTAACTGTATATATATATATATATTGAAACCTGTCAAACCTTGAATAAAATGTATTTTGAACTAACAAACTGATTTCAATTAAAATATTACGTGAATTAAAAGAAAAAAACTTTAAACAAAGTCAATTGTAGGAAATCTCTGTTTATTTAAGCTGTATAAACGGGGCACCTGTCTATTCCAAACACAAAATCTGGTTTGGTTTAGACAGGTTTCACAGTATATATCTTATAACAAATGCCATGTTTTGAATGGAGACTTAATTCATAGTATGTAAAATTGACAGCTTAAAGTTGATTATACGTTGTGTAATTGCAGATCATCACTGTTGAATTTTTTTCATCATTTAATAATGAATTTTAATATAATAGAAAGGCCAAACGAGCTTTCAATATCCGTTGGTGTCCGTCATCGTTAACCCTTTTTTCAAAATTATCGTAAGTAGTTATTAACATACATACATAAATGTGTATGACATTAAAATGTTTTTTCCCATTTAATTTCATTAATATAAAGAAGAATGGATTAATTCTGATGTCTTGGAATTTTATGAAATGCAAGTCATATAATTAGTTGTTGAAGTTAAATTACTTTCATTCAGAAATTTTTATACTTGATAAACTTATTTTGTGCATCTGGAGCTGATTTAGTCACAATTTGACAAGTTCATGCAAGAGTTGCCTCCCTTTCCCATGGTAAATCTAAAATACACTAATCCTATGTTGTGCACGTAGACCTGATTAGTCACAATTTGACAAGTTCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06602	Myotub-related	Myotubularin-like phosphatase domain	Domain	Interproscan
PF21098	PH-GRAM_MTMR6-like	GRAM domain-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010569	Domain	Myotubularin-like, phosphatase domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR030564	Family	Myotubularin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10807	MYOTUBULARIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004438	Molecular Function	phosphatidylinositol-3-phosphate phosphatase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010507	Biological Process	negative regulation of autophagy	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0046856	Biological Process	phosphatidylinositol dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18084	MTMR9; myotubularin-related protein 9	-	Protein phosphatases and associated proteins	ko01009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_18655-3.11 global RNA-seq network