Gene detail

Detailed information of Bpl_scaf_18508-1.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_18508-1.5	INTERFERON REGULATORY FACTOR	Bpl_scaf_18508	114114	126149	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_18508-1.5

TATTTATTTAATTCACTTTAGTAATTAATATTAATATTATATATTAATTATGTAAATTAAAAAATATATATATTTACATTTTACTTCAAGAGGTTCGAGAGTAATGGATTCCCATACGAGACAACGCATGCGTCCATGGTTAGAAGCCAAAATCGAAGGAGGACAAATCAAAGGACTTGAATGGATAAACAGAGATGAGAAAATATTTAAAGTTCCATGGAAACACGGTGGAAAACATGATTGGAATGAACAAGATTCACAAATATTCAAAGAATGGGCTCTACATACAGGCAGGTATAGAGAAGGTGTGGATTCCTCTGACTGGCCAACATGGAAAACTAGATTCCGATGCGCTTTGAATAAGCTACCGGATATTCAAGAATTGAAGAATTATGGGAAATTAGATGGCCCAGAACCATTTAGGGCTTACAGATTACTGAGTAAGAATGAAATAAGTTATGGTAAAAGTGAGGAGACAATGAATAATTCTCCAGAAATACAAGACCCATCTTCCTCGCCAGATTGCACTATGGATGAAAGTGAAAATATTAATTCCATGCCTGAAAAGGTTATCAAAGGCGAAATTAAATTAGAATTGGAGGACGAAGTAATCAAATCTGCCAACCTACCTTCAGACTTGAGAGATCTTCATATGCAGCCCTTACCAGGGAGTATGCAGGTTGAGATGGATGATGATATGGAATCAAAACCAGGATCCAGTGCCTTACTTAACCATTTTCCAGTAAATGCAATACCACATAAAGATATTGAGCCTACAATGGTTTTCAAGCTTGGATACAGACATGTAGATCTGGGAACACATACTGTACACAATGCTAAGGGTTGCCGGTTATATCATGGACCATCTGATATGGAACTAAATGTTCATCTACAAAATGAGATTTATGGTCCGAATGACGTTGATCAAGTACTCTTCCCGGAATGTTTCCTGGAGAATAAAAAACAACAGGAGATGACCTTAACTCTATTAAATTACCTTGACCGAGGAATAGTAATAAATGTTCAAAATGGACAAATTATTGCAACTCGAAAATGCAGGTGCACTATATTTGTTCAACTTCATAACAGGAATGAACCAGTGAAACTAAACAGGGATGAACCTACAATTATTTTTGACTATTTTAATTGGTTTGAACCTAGTATACAACGATATATCAACGGGAAAGGGTCACTCCCTTCAGCTGAAGTTATGATTAGTTTTGGACAAAAATGGTCTGGAGGAGTAAACGAATTTCACAACAATCTTATATGGTCTAAAATCTACCTGGAAGAAGCACACCAGACATTATGCAAGGTAACATGTACCAGTCCATTGTCTCCAACCATTGAAATATCCAGATCAGATAATATAGATCAGTTCTTAAGATACAAAAAGGAAGCACAGTTAGAACAGTTAGAAATGTCATAGGAATGTTTTAAATGAAAATACATTTGTTTGTGTGATCTACTGTTAATGTGTACAGAATTATGAGATTGTTGACTATTGTCTCAAAATATCTGCTTTAAAATTAATAAAACGGTTTTTTTTATCATAAAACATTTTAATAAAATGAAAGATATTTAAAAACGATGGATTATGAAAATTTTATTTTGAATTTGTTTTCTGACTAATTTGTTTATTTAGTTTGTGAGGAACTTTGCCATTTACCATATTTATGTTTGTTCCAGGGTTAGGAGTTATGGTTATGGTGTTTAACGCCACCTTCAGAAATATTTCAGTTATATCGTGGCTAATGTTGTTAGTTTGTTTGTGAGGGACTTTACCATTTAATATATTTATGTTATTCCAAAATAATACTAGCCTAAGGAGAAAATCACTCATTAAAATAAATTTGGATGTGTTTTGACCTCATAGTTAGACCAAGTGCTCTGTGATGGTCAATATATCCTGCTATTCTATGACACCATTGACAAGTTCCAGCTAAAATGAAAGATCAACATATCCTGCCATTGTTATATTTACATGTTTTAATTTTTAACTTGCATATTATACCTATCTACTTAAAATTAAGGGGATCTTTTTTCATTTCTTTTTTTTTTCTTATCCGGTGATCATCTATAGTAAGGGGCCGACCATTTAACTTGCAAAGAG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	IRF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00605	IRF	Interferon regulatory factor transcription factor	Domain	Interproscan
PF10401	IRF-3	Interferon-regulatory factor 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001346	Domain	Interferon regulatory factor, DNA-binding domain	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR017855	Homologous_superfamily	SMAD-like domain superfamily	Interproscan
IPR019471	Domain	Interferon regulatory factor-3	Interproscan
IPR019817	Conserved_site	Interferon regulatory factor, conserved site	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11949	INTERFERON REGULATORY FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0002376	Biological Process	immune system process	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09446	IRF5; interferon regulatory factor 5	-	Toll-like receptor signaling pathway	ko04620	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_18508-1.5 global RNA-seq network