Gene detail

Detailed information of Bpl_scaf_17778-4.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_17778-4.13	S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE	Bpl_scaf_17778	386800	404589	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_17778-4.13

TTGTTTGCTGATAATCTTTGTCGAGAAGCTACAGAACGAGGCCATGAAGCAGAAGTTTTAGATCTAAAGGATTATGACCCAGAAGATACCTTGGTAGAAAACAATGTTTGGGTGATAGTATTTATCTCCACTTACACAGATGGGCAACCACCAGAGGGCTCTGAATGGTTTTGTAAATGGTTGGAGGAAACATCAACAGATTTTAGAATTCCTAAAACTTTATTAAAAGGACTTCACTTTGCTGTTAGTAAAAAGATTGACCACTGTTTTAAAGCCTTGTCAGCTTCACCTATAACATCTCTAGCTTGGAAGAAAGATTTCTGGAGAAAATCTAAGAAGGTAAAAGATGATCATACTGAGGCTACAGCTAGTAAAGATGTCTGTGGTTCTGGTGAGAACTGTGGAGGCAAATGTAAATGTAAAGAAGATGGCGGAAAATGTAGTAGTGATGAAGAAATGGAGGAAGGGGAGGAAGATGACGTAGATGAAATGTTGGAGGAAGGTGGAGATGATACTTTACAAAGATCTAATGGAGTCGTAGATGTAGAAGATTTAGGAAAAGTCATGAAAAATATGAAGAAAGCAAAGGTGAGAAGAAAGAAGGAGGAATCTGGTCTGTCAACTGGTGAACCTAGAGAGATGGTGACTCCAATGTTAAAGAAAGCATTAGAGAAACAGGGATACAGGTTGATAGGGTCACACTCAGGGGTCAAATTATGTAGATGGACAAAGTCCATGTTAAGAGGAAGAGGTGGCTGTTATAAACACACATTTTATGGAATAGAAAGTCATAGATGTATTGAGACCACACCTAGTCTGGCTTGTGCTAATAAATGTGTCTTTTGTTGGAGACATCACACAAATCCTGTGGGAACAGAATGGAGATGGAAGATGGATGATCCAAATACAATCTACCAGGGGGCGCTGGATAATCATGTAGGGCTGATTAAACAGTTCAAAGGTGTACCAGGTGTTCAGCCAGAAAGATTTGCTGAAGGTCTAGAACCCAAACATTGTGCTTTATCTTTGGTTGGAGAACCCATCATTAATTTAGTTCCTGTAACTCAGTTATATGTTAGTGTTGATGCCAGTACAAAGGAGAGTCTGAAGAAAATAGACCGTCCATTGTTCAAGGATTTCTGGGAGAGATTTGTTGAAAGTTTAAAAGCTCTGAGTGCCAAGAGACAAAGGACGGTTTATAGATTAACTTTAGTTAAAGCTTGGAATACAGATGAACTGGATAGCTATGCAGAATTGGTTTCTTTAGGAAAACCAGATTTTATTGAAATAAAGGGTGTAACTTATTGTGGTGAATCAAAAGCGTCTAGTCTGACAATGCAGAATGTCCCGTGGCATGAGGAGGTGGTTTACTTTGTCAAACAGTTAACTGATAGACTGGAAGGATACGAAATAGCCTCTGAACATGAGCATTCTAACTGTATATTGATAGCCAATACTAAGTTTAAAGTGGATGAAGAGTGGTGGACATGGATAGACTATCCTAAATTTCACGAACTTATGAAAGGTTATAGAGAGAATCAAAAAATATTTTCTGCTGAGGATTATATGGCCAAAACTCCTTCATGGGCTGTGTTTGGTTCTAAAGAACAAGGCTTTGATCCAATAGAAACAAGATTCTACAGGAAAAAACAAAAAGATATAGGAGGCTGCTGATCAATCTCTAATAAAAATGTCAATATTTTTGTGTAATTTGAAACCATGCTGTGTTTTACAAGAGAAAATGTCTTGTTTTCAAACATAAAAATAATATTGATTGTTAAAAATTCATAAAAGTGTGTAAGGATTCACTTGATATAAATGTGTTCATGTCATGTGCATACATACGTGTACAGTCATTACGGTTAATTCTGCATGTTGTCTAATTATTCGCACTACTATGAATAACATAGATATGTGCAGAATTGGACGGTGCATATTATTACCTCCAACATTGTACATATATATATATACCATTTGTTGATTTGTTTTGCGAGAATTTATTTCTCAGAGAAATATCGCATCGATGAGATCAGAAATCCATTTCGTGCAAAACATATCAACGATAGTATGTTTATTGAGAATTTGTCAAAGTGACGTCAAAACAACATCACCGAGATACACATTAAAAAATGTACAAATCATTAATAAATATAAATTATCAGTAGATAAAACAACAGAAGGAAAATGTCAATTTATGTTTGTAAATAAAATAATGCAAGACAACCATAATAAATGGTCACTAAAGACAGGTGGCTTCTTAATACAGGTCATAACCATGATAAATGGTCACTAAAGACAGGTGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00258	Flavodoxin_1	Flavodoxin	Domain	Interproscan
PF08608	Wyosine_form	Wyosine base formation	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007197	Domain	Radical SAM	Interproscan
IPR008254	Domain	Flavodoxin/nitric oxide synthase	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR013917	Domain	tRNA wybutosine-synthesis	Interproscan
IPR029039	Homologous_superfamily	Flavoprotein-like superfamily	Interproscan
IPR034556	Family	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13930	S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0010181	Molecular Function	FMN binding	Interproscan
GO:0031591	Biological Process	wybutosine biosynthetic process	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15449	TYW1; tRNA wybutosine-synthesizing protein 1	EC:4.1.3.44	Transfer RNA biogenesis	ko03016	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_17778-4.13 global RNA-seq network