Gene detail

Detailed information of Bpl_scaf_17714-15.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_17714-15.7	NUCLEAR HORMONE RECEPTOR	Bpl_scaf_17714	1498379	1511574	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_17714-15.7

ATGCTAAGTCTTCTTGTAGAAACCGATGTAAAGCTTGTCGGTTCAAGTTATGTCTTCAGTTTGGTATGTCGTTGGATGGTAAGTTTTCTTGTAGAAACTGATGTAAGGCTTGTAGGTTCAAGTTATGTCTTCAGTTTGGTATGTCGGTGGATGGTAAGTTTGGTGGTAGAAACCAATGTAAAGCTGATAGGTTCAGTTTGGTATGTCGGTGGATGAATACCTAAAACAGAGAAAGACAAAGCTCTAGCAGAGGCAGCACGTGAATCTATATCTGATAATTATGTGGATGGTGACCATGGAATTGCCCGTCCACCCGCTTCACATCATCATCAATTGGCAAGCAACATACGACAACACGATTCATACGGTCCACACAGCTCATATGATCATTCATATTCCACAGAAGAAATGCATGCTGGGAACCCGTTCATGGATGCAGATTTAGACAAATATCTACCTACTACTGTAGATTCTCAAAAAATGGAATACAGCGAAAATTGTCCTAGTAGTCGTAAAAATGCAAGGCATTCAAATTGTAAAGAGATAGAAAAAGGTCCAATTTCCTCTTATCATAATAGACCAGTATCATTTAACTCAAAGCTGAAAACTCAGTACAGCTGTCCTCAGTCATCGTCAAGACAACAAGATAATAACGATGCCAAGGACAGAAGTCCCCGGTTTCCACTGAATCGCAGTCGTAGTACTCATGATAACATCCAGGAGTCCTCCAGATATTATAATCATAGTGCCCAGGAAAACGGTGGTCAGTCTTCATCAGGATATTACACTGAAGCCCAAGATAGCAGTCCTCAGTCCATACTGAGGCACAGAAGTAGTGAAGCCCAGAATAAAAGTCCTGAGTCCTTAATGAAGCAAGATAATGATGGAATCCAAGACAACAATGTCCCGTTATCATGGAGACATAATATTACAAATTGTGGTGTCAACAATTCTCAATCCCAGCAGTTGATATCACAGTGTGAAAGCAAATTCACTGAAAGCACACGTGACAGTTTTGCTGCTCCTCCAAACATTCCGAGTGCCTTACCTCCCTTTGAACCTGGCACTAACAATCAGACAAATCTACAAACTGCCTTACAGTTGGCTGAGTCAAGCAGCCATTTTAGCTCAGAAGTGATAGAGGAATTAGTCAGACAAGTTCTAGACACGTCTGAAGCTTCAAGGTTGGCTAATGAACAAACAACTGGTATGTCGTCTGCTTCTATACAAACATCGAGTATGTCGTCTGATCCTGTACAAACATTGAATATGTCATCTGCTTCTTTACAATCACTTTCATTAACAGATAGTCATTCAGAATTTACTGGTCGCTCCCATGGCAACATTGATGATTTTGACGGTACTTTGAGACGTCAGTACCATGACAAGGAAAATATGTATCATAAATCAACAGAACATTCGGACATTGGCAGACATTTTAATCAAGATGATTCTAGAATAAATGCTTTGAGAGCAGAAACTGAAAACATGGCAATTTCCAGATCTTATAATGGTAGTGATGAATCTGGAAATGTTACCCAAAGGGAAAGAACAGAAGAGGACGCCCAGGAGTCCAATGCCTTGATTGATGTCACATTAGAACGTTTCGTAGCTCCTATCAAATATTTGTTTTCATTTCAAGCTCTCAATAAGGAATGTTTTAGGAAACAAATGGAAGAAGAGTGTCAATTTCCATTTACAACTGGTGACAGAACGAATTTGAAATTTGTGTGGGACGAATTAATGGCAGGAGTTCAGAATTATAATACACAAGTCATGGGATTTTGCAGCATAGTACCAGGATTTTCTAACTTTGTTAAAGGAGATCAGGAAAAGTTGGCTATGAATGCCTACATGGAAATCTGGATGATGATACATGCTGAGTTTTTGACAGGACAAGAGTCATATGTTCTGTTGAATCATAAGAAGATATTTTACTCCAAGGACACAATGACTTTAATCCTCGGTGAAGAACTCACTAATCTCATGTTGGACTTCGGTAGAAAATTTAATCAGTTTAATCTGTCAGATTTTGAGATTGGTCTTCTGTGTGCTGTAAGATTAACAAGTCCAGAAGTGGAAGGCTTAGAACAGAAAGATAAAGTAGAACTACTCAATTCTTTCTACAAGTTTATTATATTTGTTTTACAGAGGTGGAAGGCTTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR050234	Family	Nuclear hormone receptor family NR1 subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24082	NUCLEAR HORMONE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08531	NR1D2; nuclear receptor subfamily 1 group D member 2	-	Circadian rhythm	ko04710	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_17714-15.7 global RNA-seq network