| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_17465-2.8 | COLLAGEN ALPHA | Bpl_scaf_17465 | 153858 | 197759 | + |
| CDS | |||||
| Bpl_scaf_17465-2.8 | |||||
| Transcript |
| Bpl_scaf_17465-2.8 |
| Protein |
| Bpl_scaf_17465-2.8 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01391 | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| PF01410 | COLFI | Fibrillar collagen C-terminal domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000885 | Domain | Fibrillar collagen, C-terminal | Interproscan |
| IPR008160 | Repeat | Collagen triple helix repeat | Interproscan |
| IPR050149 | Family | Collagen superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24023 | COLLAGEN ALPHA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005201 | Molecular Function | extracellular matrix structural constituent | Interproscan |
| GO:0005615 | Cellular Component | extracellular space | Interproscan |
| GO:0031012 | Cellular Component | extracellular matrix | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K19719 | COL2A; collagen, type II, alpha | - | PI3K-Akt signaling pathway | ko04151 | PMID: 28812709 |
| ECM-receptor interaction | ko04512 | PMID: 28812709 | |||
| Focal adhesion | ko04510 | PMID: 28812709 | |||
| Protein digestion and absorption | ko04974 | PMID: 28812709 | |||
| Human papillomavirus infection | ko05165 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_17465-2.8 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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