Gene detail

Detailed information of Bpl_scaf_17102-1.2 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_17102-1.2	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49	Bpl_scaf_17102	73234	95826	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_17102-1.2

TTGTTGACAGCTCATTTTACTAATGGTAACATAAAAGAAGCTGGTGGTAATGGTTTAACCTTTGGACAATTTATCAACAGTGGAAATGCTAGAAGGAAAAAGACAATATTGATTGGAGAGACAAAAGACATGTCATATGTTGGGAAAAACTTTGGACCAGATGCCAGTAAAGCTCAAAGCTACTGCAGATATTATGTTGGTGTAGTAGACAAGAAAAAGAGTAAAATGAGAATTTATGATTCTGAAATTATGCAAATGGTTCCAAAATTACCAGATTATCAAGAGGAAGAAGAAAAAGAGAAAATAAGCATACCAGGAAACAGTGATAAAACCTATAAACAAAAGATTGACGACTTGACAGCATCTTTTGGGAGTAAGAAGAAAAGACAAGCAATGGGATCACGATTACGAAATGAAATCCGAGGAGAGGCGTTAGAAAAAGCTCTCAGTTCTGCTGTTGATGATGCTGTCTCTCAAAATAGAAATTTATCAGTACCTGTTGACAGTGGAGGTGGCATGCATTCATCATTGATTCCCCCTTATAACAAAGATGCAGAGAGACCTGAGGATGTATATTCTATAGACAGTATTATGAATCCCCACGAAATGGAGGTTATAGCAATACCTGCTGAAAAGATCTATGAAAGTAAGACAGACATCATTAAACAGTGGCAAGAGAAAGAAGAATTTCCAACGTATGTATTAAACCACATTGCCATACTTCCTAAATTACCAGAGAACAGATGGAAGAAATCTAAAATATTGATGTATCTTTCTTATCTAATAGAAATGTACAAGAAACCAGCCAAATTCTTCAGGGCAAAAGATCCTTTACCATCTGACTGGCCAGAAATGATCAAAACAAAATTGTATAAAAATTATACATTATTTGTGGACTCGGGACCAAAACCTACAAGATGTGTACCACTACGACTGAAAGACAAACTGATATTGAATATATTAGTGCTTTGCCTTATTCTAGATGAATTTGAATTGCCTTTGAATGATTTACAAAAAGATCTAAAAATAGGAGGAAGAAGTTTAGATGCACATGTAAAAGCACTGGGTTGTAAAGTGAAAGTGCGGAAACAAACCACTCATGATGGTGAAAAATTGGAAATAAGACTAGCAACACTTGAAGTACCTCTGACATTTCCTGAAGTATCAGTAAAAAGAAAGAAGGACAGACGATAAATTATAACTTTCTAATATTACACACAGTAAAGACAGGAAAAACATATTGTTACCTAAGTCTGAATAAAAAAACATATTGTTACCAGTCTGATTAAAAAAACATATTGTTACCAGTCTGATTAAACAAAAACATATTGTTACCAGTCTGATTAAAAAAACATATTGTTACCGTCTGATTAAAGAAAAACATGTTGTTACCAGTCTGATTAAAGAAAAACATATTGTTACCAGTCTGATTGAAAAAACATATTGTTACCACTCTGAATAAAAAAACATATTGTTACCAGTCTGATTAAAAAACATATTATTACCAGTCTGAATAAAAAAAGTATATTGTTGCCAGTCTGATTGAAAAAAAAAACATATTGTTGCCAGTCTGATTAAAAAAAACATTGTTACCAGTCTGATTACACATTTTGATAAACATACAGGTAATATTTCACTATTAGATCCTATTTTGATAACTGATTCAATACAGGCTATCGATTCAGATACAATAGAAATTGATAGACAAATCAGTGATCACGATGGAACTTATGTCACCTTTAAGTGTGGGTTTTCTAATCAGAAAACTTTTCAACGTACTATTTGGGATTACAAAAGGGGAGATTATACTTTATTGAGACAAAAAATTATTGATACAAATTGGGAAAAATTGATAAATGATGAATTAGATGTTAATAATGCTTGCTCAAATTTTACCGATGCCTTTTTAAATATAGCCAAAGAATGTATACCAACACGGGAAGTAACTATCCGAACAGATGACAAAATGTGGTTTGATTCAAATTTGCACCGGGAATCTCGAAGACGAGATAGACTTCGAAAAACATTTTTAAGAACTAAAACTGTTTCTGCTGAAAAACAATACAAAAAACAACGTAATAGAGTTAATAACTTAAAAAAGCAGGCAAAAGAATTATTTTATGCAAATATTAACGAAAATCTAGACGAACTTAAAACTACTGATAGCAAGATGTATTGGAAAACGATACATATGTTAATAAAAAACGAACGTTCTGCAAATACTATGCCACCTCTTAGAGATCGTGATAATAATTTTAATTTATCTTACGATTGTTTTGAAAAAGCTGATATATTGAATAAACACTTTTGCTCTATCTCTGATCTAAATGACAGAAATAAAGACCTACCCTCTTTTGAAGTTAGGTGTAAAAATGTTCTCTCGCAAATAGTAGTGAGTGAGCAAGATATTTTGGATATGATTTCCACTTTAGATGGTAATAAAGCTGTTGGACCGGATACCATAAGTAACAAGATGCTTATTGCAGTAAAAGTTCAAATTTCAAAACCATTATGCTTGTTTTTTAATAAATCTCTCCATCAAAATATATTCCCAACAGATTGGAAATTAGCATCCTTTATTCAAAGCAGGAGATAAATCATTCCCTTCTAATTATAGACCAGTCTCATTGCTTTCATGTGTTAGTAAACTTTTAGAAAATATAGTTTTTAAGCATATCTTTAATCATTTACAGGGAAATAAATTATTGTGTAAATTTCAGTCAGGTTTTTTGCCAGGTTGCTCTACTACCCATCAACTTGTAGAATTATATCATAGAATTTTACTAGCTTTGGACAGTAAGCAATTTACAAGTGTAACGTTTGCCGATATAAGTAAAGCTTTCGACACTGTGTGGATAAAAGGGCTTTTACTCAAATTGGAGAAATATGGTATAGGGGACAATTTGCTTATCTGGTTAAATAGTTACTTATCAAACCGCACACAAAGAGTTGTGATAAAAGATGCTCTATCAAACATTGGTCAGCTTAAAGCAGGTGTGCCTCAAGGGTCGGTGTTGGATCCGTTATTATTTTTGGTATTTATTAATGACATTGCAGATGGTATGACTGGTTTAGGTAGATTATTTGCAGATGATACATCGATTGGACATATTGCAAATGACAAAGATTCTTTACAAGAAATGGTAAATTTAGACTTAGCTTACCTAAATGATTGGTCAAAACGTTGGTTGAAATTATGGTCTTTAATACCAGAGACACAAAACTTTAGTTCAATTTTGACTTTGATGGTGCTTCACTAAGAGATGTTAAATTACATAAACATTTAGGTGTTACTTTTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06870	RNA_pol_I_A49	A49-like RNA polymerase I associated factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009668	Family	RNA polymerase I associated factor, A49-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14440	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001188	Biological Process	RNA polymerase I preinitiation complex assembly	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005736	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0006362	Biological Process	transcription elongation by RNA polymerase I	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03005	RPA49, POLR1E; DNA-directed RNA polymerase I subunit RPA49	-	Purine metabolism	ko00230	PMID: 28812709
			Pyrimidine metabolism	ko00240	PMID: 28812709
			RNA polymerase	ko03020	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_17102-1.2 global RNA-seq network