Gene detail

Detailed information of Bpl_scaf_10866-2.17 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_10866-2.17	NGD5/OSM-6/IFT52	Bpl_scaf_10866	192108	213125	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_10866-2.17

GGCGCCGACTGCAGAGGTAAATTCCTGATTTTGTTGAGTTTTATAGACATTTGACAAGTTTGAAATATTTTGGACGACGGAAAAAGATATATAGCAAAAATAATAGGAAATGGATGACAAACAGCAGAGAAACACTATCATTTTTAATTCCTCAAAAAGTGAACTGTTTACACCAAGTAATGGATTAAAGTCACTGAACAGAAAACTCAGATCACAATGGAAAATAATGAACAACAAAGAAGAGATAACTCTGGACAGATTATCAAATGCAAGCATCTTTGCTTTATGTGGTTCAAGAGAAAAGTTCACTGGTGCTGAGTTTAGTGCTATAAAGACATACATGGAAACTGGAGGCAGTTTATTAGTGATGATGGGTGAGGGTGGAGAGTCTAGATTTGAAACCAACCTCAATTTTTTGTTAGAAGAATATGGTGTATTTGTTAACAATGATGCAGTTGTGAGAACTTCTTATTACAAATTCTTTCACCCTAAAGAAGCCTTAATAGCGAATGGAGTTTTAAACAGAGCTGTCAGTCAAGCTGCTGGTAAAAGTTTTACTATGGCAGACGATGATTCTAATAATTCACAGGCATTGTCGTTCCTTTATCCCTATGGAGCCACCTTAAATGTGATGAAACCTTCTGTAGCTACCTTATCAACAGGAAGTGTATCATTTCCTCTCAACAGACCTGTTTGTGCATTCTACTCCTCAAAGGGACGAGGGAAGATGGTTGTGATAGGATCAGCACATATGTTTCATGATCAGTATATTGATAAAGAAGAAAATTCAAGAATTCTGGATGTTGTAGTACGATTTCTAACAACAGATGATATTAGATTAAATCCAATAGATGCTGATGATCCTGAGGTGTCAGATTACAGTCAGTTACCAGATATAGCAACACTGGCAGCAAAGTTAAAAACATGTCTACAAGAAAGTGACGAAGTTCCAAGGGACATAACTGCATTGTTTGATAATTCTTTATTCAAATTAGATACAAGTTTGGTTCCAAAAGCTATAAAAGCTTATGAACAATTAAGTACAAAACATGACTCTTTGACATTAATAACACCACAGTTTGAGACACCTCTACCACCTTTAAACCCTGCAGTATTCCCACCACAATTTAGAGAATTACCTCCCCCTTGTCTGGATCTATTTGATCTTGATGAACAATTCTCATCAGAGAAAGTCAGATTAGCTCAACAAACAAATAAATGTACAGATGAAGATTTAGAATATTATGTCAGAGAATGTGGAGATATTTTAGCTGTTACAACCAAGCTCCCTTCGGATACCAGAGATGCTAAACATATACTAGAATATGTCTTTGCACAAGTGGTAGAATTTAAGAAGCTAAACCAGGAACAAGATTATGATACTGCACAATTTAGAGGAGGAAGTTATGATTAACTCGATCCATTTAAACATTAAAATAAAATCTGTCATTATTTTGCAAAAAAAAAAAAAGACTCATCAGACAGTGTTCACCAAAGTGTTCTTTAGGCTAATTAATGAAAGAACTGGTACTTATATATAGTCCATTGTGTCTATACTTCACATCTGTAAAGATCAAGTACTGTATTTAAAGTAGCAGACTTGGTGAAAATGACAGTAACATTTCTTTTTAATTGGGGGAGGGAGGGGGGGGGGGGTGCACATTATTGAACCTTCGGTTCCAAGAAGAAAGTTGGATGCTAATGTCAAGTGATGAGGTGGGAAAAATTGGTACAAATAGATAAGCATGTCTTGTCATCTGGGAAGGGGGTCATATTTTTTAACCATATAATAATAACAAAAATAGTGAGTTTACACTGTAGGTTGCTGTTGGCAAGTAAAGTGTAGAATTAACATTTGCCTATCTAGTATAGGAAAGTGTGACTGATAGACACTTCCCTTTCACAAATATTTTGTTGATGTTACAGATCTGAAATTTGTTGTATTATGTGCTGTAGATCTCCGTCCTATTTAAATCTTTACATATCATGTAAATATAGATGTAAGAAATTGTTTTATAAGAATCTTTAATAAACGTAATTTATTGGTAGTCTTCATATTTACTCTGTTATCACTACACAAATAAGTTTGATGATTATTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21178	Itf52_C	Intraflagellar transport protein 52, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029062	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR039975	Family	Intraflagellar transport protein 52 homolog	Interproscan
IPR048643	Domain	Intraflagellar transport protein 52, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12969	NGD5/OSM-6/IFT52	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005814	Cellular Component	centriole	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan
GO:0030992	Cellular Component	intraciliary transport particle B	Interproscan
GO:0042073	Biological Process	intraciliary transport	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19681	IFT52; intraflagellar transport protein 52	-	Cilium and associated proteins	ko03037	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_10866-2.17 global RNA-seq network