Gene detail

Detailed information of Bpl_scaf_10487-3.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_10487-3.6	RAD50	Bpl_scaf_10487	294446	388196	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_10487-3.6

ATGTCTTCCATAGACAAAATGAGTATTCAGGGGATTCGAAGCTTTGGTCCAGATGATACACAAAAACAAATAATCCAATTCTTCACCCCATTGACCCTGATCCTAGGTCCTAATGGAACTGGTAAAACAACTGTAATAGAAGCACTGAAATACATTACAACAGGTGTAATGCCTCCTGGAAGTAACAGAGGTGGTGCTTTTGTCCATGATCCAAAGTATGCAAATGAGCGAGAAGTGAAGGCCCAAGTCAGACTCCAGTTTCATGATGTTTCTAACAAACTGACAATTGTACAAAGAAGTATGACTGCAACACAGAAGATTGACAGAGGTAATGTTATATACAGATTGACAGAGAGGCCATTAAGTGAAGGAAAACAACTGAAGGATAAATTTGATGATATATTTGCATCTACAAGATACGTAAAAGCCTTGGATACAATTAGAAAGCTTAAACAAACTCAGGATGCTGATGTAAAGAATTACAGAGTAGAGATTTCATATCTTAAACAGCATAAAGACAAGGCTGCACAAAAAAAATTGAATCAGATAGGAGCAAAATCACAAGATATATACAAACTACAGACCCAGATAACTCAGCACACAAGTGAAAAGCAAGAAATGGAAAGAACAGTGGAAGAATTACAGAAAAATATTGACAATGAATTTCATGGTTCTGTAGAAGAATTAAAGAGAGTTCTAGCTGAGTTTCAAAACAAAGTACAGGATAGAGAAGATACTTTATCTCAGTTTAAAGAACAACAGAAGGACTTAGAAAAACAATGTGACCAGTTAAATAAGAAGAAAAGTGATTTGTTAATGCAAGTGGGAAAGTTAGAACAGGAAGCACAGGTCCAAGAAGATAATGTGGATAAAAGAAATAAATTGATTGTGCAATTTTCTAAAAAATATGGATTTGAAGGCTTCACCGGATGTGAAATTACAGACGAAAAATACAGAAGTTTTATTGAAGCCGTTCGCAGCGAGTTAGAATCTATGGTTAGCGACGGAAAGAAACTCAAGGTAGAATATGAAGAAAAAGAAAAAAATGTCCAAGTGAAAATAGATGAACTGAAAGAGAATAAAACTAAGCTGGAACAAAGTGAACACATTAAAAGGAATATGATGAAAGACAATACAACAAAAATCAAAGAGATCAATCAGAAGCTAAGTCAAGTCAATGCCTCGGCAGGAAAACTAGAACAGCTTACTAGAGAATTAAAGAGAGCGGAACATGACTTACAGTCTACAGAGGGCACTGTAGATATACCAAAACTTAAACGAGAGATTGATCAGCTAGTCAAAGACAAATTAAATCTGGATGCCAAAATCAGTCAGCTGAGCACTGAAATGAACCGACTACATCTACAATCCAGTGCTCAAGCTCAGCTGGATGTTTTAAAGAAAGACAAGGCTTCAAAGGAAGAACATATTAGAAGATTGAAAGCCAAACAGGAAGATACAATTAGTTACTTACTTGGACACATGCCAAAAACTAACATCAGGACACAGATAGATGATTATATTGGGAAACAGTCAGAAAGTGTGAAGAAACTTAGACAAGAAGTTAATCAATGTAAGAATCAGTTATCAACAAGAGAAGCTGAGAAGAAAATGGTCAGTGAAACCTTGAGGAAGAAAGAAGATGAATTAAAAAATTTAGAAGAGAAGATTTTTAGTGTTTGTGGCAGGCAGAACTTGGATGAGGGACTTCAGACATTCCAAGATAAAATGTCACAAGCTCAGGACATAAGAGGATCTCTACTTGGATCAGAATATTTCTTCAAGAAGTATGCATCAGACTTGGAAAAGGATGATCCATGCTGCCCCCTATGTCACAGAGAATTTGACACTGACCAAGAAGTCAAAGAACTTGTTATTGAGTTGAAAGACAAGTTGAGGTTGGTACCCACAAAGTTAAAGAAAGCAGAGAAAGATCTAGATGAGTTCCGAAAGAAGTACGAGTCCATGATGCAGCTGAAGCCTCTAATGGAAAATATAACAACTTTGAATCGCAAAGAAATTCCAGAACTTAAAAACAAAGTTCAGAAACTTAATGAAGAAATTGGTACACTGCGAAGTAAAATAGAAGAGACAGAAGACGATCTTCAAACGAAGGAAGGTGATGAGGACATGGCCAAACAAGTACAACCTGATGTGGTCCAGATTGATCGTTATCATGGGGAGGTAATAGAACTGGATAGGAAAATTGCAACACAGCAGTCTCAATTATCTGGAGGTGATTCTGATAGGACACTACAAAATGTTATAGATGAGAAAGAAGACCACCAGATGCAGGTAGACACAATCTCCAAAAATCTAGACAGGAAGAGGCAGAAGATAAATGACCATTCTGAAGAATTGTTGCATTTGAAAAGTAAGATCAATACCTTAAAGGATGAAAAGCTTCAGATTGACAGTGATTTACAACAGAGGTATAAATTAGAGGAAGACAAAGCTACATTTCTGAGTGAAAATGAAGAAATTAAAAGAGAAATTCAGGAAGCCAGTGAACAGATTAGACCCATACAGAATAAAATAGATAAAAGAATAGAAGAAAAGGGTAATATAACAACAGAAAAGGAAGAGAAAATAGAATCTGCTAAGGCAGAGGTGGACAGATTGAAAAGTGATGCCAATAAAGTAAAGAATATCAATCAAGAAATTAAAAGTTACATGAACCAGGGGAAAGCAGAGACTCTAGAGGAAGTGAGGACAAAGAAAGAACAATTAGAAGTAAAGACAGGAAAGAAAGAGAGTGAGAAGAAAGAAGTGACACAGAATATAGCAAAGATACAGAATGATCTGGCTACACAACGGACAAGAGAGAGAGAATTAATGGATAACTTACAGCTGAGGAAGAAAATGAAGGAGATTGATATTGTTGACGAGAAAATAGCAGAATTAAAGGAAAAGTTGGGAGATATTGACGTGACCCATCTTAATAGGGACCGTAACCGTCTGCTGCAACAACAAGAAGATCTTATGAAGGAAAAGCACCATGCAGAAGGCAGACAGAGGGGTTTTGAAGATCAAATTAGGACAGTGAAAACAGAATTGAAATCAGATATGTACAAAGGAGCTGTTGAGAAGTATAGGGACAAAATGATTGTTTTGAGGACAACTGAATTAGCCAGTAGTGACCTGGAAAAGTATTATAAAGCTTTAGACACAGCAATTATGAGGTATCATAGTCTGAAGATGGAAGAGATCAACAAGATTATCAAAGAATTATGGCATAATACATACAGAGGAAATGATATTGATACAATTGAGATTCGTTCTGACGAGGATGAGAGTGGCATAATGAAGAGTCGACGTAATTATAATTACCGTGTAGTGATGATAAAAGGAGACACAGCCTTGGACATGAGAGGTAGATGTAGTGCTGGACAAAAGGTTTTAGCATCTCTAATTATCAGACTAGCTTTAGCAGAGACATTTTGTTTGAACTGTGGCATTTTGGCATTAGATGAACCAACCACTAACCTGGACAGAGAAAACATTGAAAGTCTGGCTTTTGCACTTGTTGAAATAATTCGTGGACGAGCCCACCAGAAGAACTTCCAGTTAGTCATTATCACTCATGATGAAGATTTTGTTGAATTGATGGGAAGGTCGGATTATGTTGAGGAATTCTTCAAGGTCAGAAAAGATGCAAATGGTTATTCCCAGTTGGTGAGAGCACTAGTTGCAGAGATGCACAGTAGATAA

Transcript

Bpl_scaf_10487-3.6

AAAAAAAACCAAGGGAGATAACAAAAAGCGCACATGTAGGCTAAAATGAAATGAAAGTAGGTCTGACTAAAGCACCCTGTCTAAAGAGGATGATTTACAAATAAGGCATATAAGACATTTAAGAAGGTGCTGAAAGTTCAAACAAGATGTCTTCCATAGACAAAATGAGTATTCAGGGGATTCGAAGCTTTGGTCCAGATGATACACAAAAACAAATAATCCAATTCTTCACCCCATTGACCCTGATCCTAGGTCCTAATGGAACTGGTAAAACAACTGTAATAGAAGCACTGAAATACATTACAACAGGTGTAATGCCTCCTGGAAGTAACAGAGGTGGTGCTTTTGTCCATGATCCAAAGTATGCAAATGAGCGAGAAGTGAAGGCCCAAGTCAGACTCCAGTTTCATGATGTTTCTAACAAACTGACAATTGTACAAAGAAGTATGACTGCAACACAGAAGATTGACAGAGGTAATGTTATATACAGATTGACAGAGAGGCCATTAAGTGAAGGAAAACAACTGAAGGATAAATTTGATGATATATTTGCATCTACAAGATACGTAAAAGCCTTGGATACAATTAGAAAGCTTAAACAAACTCAGGATGCTGATGTAAAGAATTACAGAGTAGAGATTTCATATCTTAAACAGCATAAAGACAAGGCTGCACAAAAAAAATTGAATCAGATAGGAGCAAAATCACAAGATATATACAAACTACAGACCCAGATAACTCAGCACACAAGTGAAAAGCAAGAAATGGAAAGAACAGTGGAAGAATTACAGAAAAATATTGACAATGAATTTCATGGTTCTGTAGAAGAATTAAAGAGAGTTCTAGCTGAGTTTCAAAACAAAGTACAGGATAGAGAAGATACTTTATCTCAGTTTAAAGAACAACAGAAGGACTTAGAAAAACAATGTGACCAGTTAAATAAGAAGAAAAGTGATTTGTTAATGCAAGTGGGAAAGTTAGAACAGGAAGCACAGGTCCAAGAAGATAATGTGGATAAAAGAAATAAATTGATTGTGCAATTTTCTAAAAAATATGGATTTGAAGGCTTCACCGGATGTGAAATTACAGACGAAAAATACAGAAGTTTTATTGAAGCCGTTCGCAGCGAGTTAGAATCTATGGTTAGCGACGGAAAGAAACTCAAGGTAGAATATGAAGAAAAAGAAAAAAATGTCCAAGTGAAAATAGATGAACTGAAAGAGAATAAAACTAAGCTGGAACAAAGTGAACACATTAAAAGGAATATGATGAAAGACAATACAACAAAAATCAAAGAGATCAATCAGAAGCTAAGTCAAGTCAATGCCTCGGCAGGAAAACTAGAACAGCTTACTAGAGAATTAAAGAGAGCGGAACATGACTTACAGTCTACAGAGGGCACTGTAGATATACCAAAACTTAAACGAGAGATTGATCAGCTAGTCAAAGACAAATTAAATCTGGATGCCAAAATCAGTCAGCTGAGCACTGAAATGAACCGACTACATCTACAATCCAGTGCTCAAGCTCAGCTGGATGTTTTAAAGAAAGACAAGGCTTCAAAGGAAGAACATATTAGAAGATTGAAAGCCAAACAGGAAGATACAATTAGTTACTTACTTGGACACATGCCAAAAACTAACATCAGGACACAGATAGATGATTATATTGGGAAACAGTCAGAAAGTGTGAAGAAACTTAGACAAGAAGTTAATCAATGTAAGAATCAGTTATCAACAAGAGAAGCTGAGAAGAAAATGGTCAGTGAAACCTTGAGGAAGAAAGAAGATGAATTAAAAAATTTAGAAGAGAAGATTTTTAGTGTTTGTGGCAGGCAGAACTTGGATGAGGGACTTCAGACATTCCAAGATAAAATGTCACAAGCTCAGGACATAAGAGGATCTCTACTTGGATCAGAATATTTCTTCAAGAAGTATGCATCAGACTTGGAAAAGGATGATCCATGCTGCCCCCTATGTCACAGAGAATTTGACACTGACCAAGAAGTCAAAGAACTTGTTATTGAGTTGAAAGACAAGTTGAGGTTGGTACCCACAAAGTTAAAGAAAGCAGAGAAAGATCTAGATGAGTTCCGAAAGAAGTACGAGTCCATGATGCAGCTGAAGCCTCTAATGGAAAATATAACAACTTTGAATCGCAAAGAAATTCCAGAACTTAAAAACAAAGTTCAGAAACTTAATGAAGAAATTGGTACACTGCGAAGTAAAATAGAAGAGACAGAAGACGATCTTCAAACGAAGGAAGGTGATGAGGACATGGCCAAACAAGTACAACCTGATGTGGTCCAGATTGATCGTTATCATGGGGAGGTAATAGAACTGGATAGGAAAATTGCAACACAGCAGTCTCAATTATCTGGAGGTGATTCTGATAGGACACTACAAAATGTTATAGATGAGAAAGAAGACCACCAGATGCAGGTAGACACAATCTCCAAAAATCTAGACAGGAAGAGGCAGAAGATAAATGACCATTCTGAAGAATTGTTGCATTTGAAAAGTAAGATCAATACCTTAAAGGATGAAAAGCTTCAGATTGACAGTGATTTACAACAGAGGTATAAATTAGAGGAAGACAAAGCTACATTTCTGAGTGAAAATGAAGAAATTAAAAGAGAAATTCAGGAAGCCAGTGAACAGATTAGACCCATACAGAATAAAATAGATAAAAGAATAGAAGAAAAGGGTAATATAACAACAGAAAAGGAAGAGAAAATAGAATCTGCTAAGGCAGAGGTGGACAGATTGAAAAGTGATGCCAATAAAGTAAAGAATATCAATCAAGAAATTAAAAGTTACATGAACCAGGGGAAAGCAGAGACTCTAGAGGAAGTGAGGACAAAGAAAGAACAATTAGAAGTAAAGACAGGAAAGAAAGAGAGTGAGAAGAAAGAAGTGACACAGAATATAGCAAAGATACAGAATGATCTGGCTACACAACGGACAAGAGAGAGAGAATTAATGGATAACTTACAGCTGAGGAAGAAAATGAAGGAGATTGATATTGTTGACGAGAAAATAGCAGAATTAAAGGAAAAGTTGGGAGATATTGACGTGACCCATCTTAATAGGGACCGTAACCGTCTGCTGCAACAACAAGAAGATCTTATGAAGGAAAAGCACCATGCAGAAGGCAGACAGAGGGGTTTTGAAGATCAAATTAGGACAGTGAAAACAGAATTGAAATCAGATATGTACAAAGGAGCTGTTGAGAAGTATAGGGACAAAATGATTGTTTTGAGGACAACTGAATTAGCCAGTAGTGACCTGGAAAAGTATTATAAAGCTTTAGACACAGCAATTATGAGGTATCATAGTCTGAAGATGGAAGAGATCAACAAGATTATCAAAGAATTATGGCATAATACATACAGAGGAAATGATATTGATACAATTGAGATTCGTTCTGACGAGGATGAGAGTGGCATAATGAAGAGTCGACGTAATTATAATTACCGTGTAGTGATGATAAAAGGAGACACAGCCTTGGACATGAGAGGTAGATGTAGTGCTGGACAAAAGGTTTTAGCATCTCTAATTATCAGACTAGCTTTAGCAGAGACATTTTGTTTGAACTGTGGCATTTTGGCATTAGATGAACCAACCACTAACCTGGACAGAGAAAACATTGAAAGTCTGGCTTTTGCACTTGTTGAAATAATTCGTGGACGAGCCCACCAGAAGAACTTCCAGTTAGTCATTATCACTCATGATGAAGATTTTGTTGAATTGATGGGAAGGTCGGATTATGTTGAGGAATTCTTCAAGGTCAGAAAAGATGCAAATGGTTATTCCCAGTTGGTGAGAGCACTAGTTGCAGAGATGCACAGTAGATAATACATTTTGTTTACTCATAGATAACGACCATTTTATTGATGAGAAAGTTACAAACATCAAGAAAATAAGTCGTCCTGTATTGGTTTCTAGAATTTCTTCTTGAAAATCTGAATTCATTAAAGGAAGGACTTGGACATCAATAACGAAGTAATATTGTGTCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04423	Rad50_zn_hook	Rad50 zinc hook motif	Motif	Interproscan
PF13476	AAA_23	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004584	Family	DNA repair protein Rad50, eukaryotes	Interproscan
IPR013134	Domain	RAD50, zinc hook	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038729	Domain	Rad50/SbcC-type AAA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18867	RAD50	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000722	Biological Process	telomere maintenance via recombination	Interproscan
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0000794	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0003691	Molecular Function	double-stranded telomeric DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0007004	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030870	Cellular Component	Mre11 complex	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0043047	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051880	Molecular Function	G-quadruplex DNA binding	Interproscan
GO:0070192	Biological Process	chromosome organization involved in meiotic cell cycle	Interproscan
GO:0090305	Biological Process	obsolete nucleic acid phosphodiester bond hydrolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10866	RAD50; DNA repair protein RAD50	EC:3.6.-.-	Homologous recombination	ko03440	PMID: 28812709
			Non-homologous end-joining	ko03450	PMID: 28812709
			Cellular senescence	ko04218	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_10487-3.6 global RNA-seq network