Gene detail

Detailed information of Bpl_scaf_10298-3.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_10298-3.11	PROTEIN SIDEKICK	Bpl_scaf_10298	428273	491949	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_10298-3.11

ATGGGTTATCTCACTATTAAAGGCTTCATGATTGACAGCGATGTAGTAAAAAGTTTATTAGAACCAGACATTGTTGTAGCCATCCCCTGTGCATTGTTAAAATATGACATAGCCACTAATTTCCATCCATATGATCAACCCCCAAGTATTATTGGAGAACCTCAACCTGCCTATTGTAACAAACCTGCCTGTGATGTTGGAGATACAGTAACAATATATTTTAAAGAAAAAGAAACAATTAGAATTCGTTATGATCAACCCCCAAGTATTATTGGAGAACCTCAACCTGCCTATTGTAACAAACCTGCCTGTGATGTTGGAGATACAGTAACAATATATTTTAAAGAAAAAGAAACAATTAGAATTCGTTGTATTTCAAGTGGACGTCCTAAAGTTAGCTATCAATGGACAAAAGATGATGTAGACTTTGATATAAGTGCATCTAGAATTAGTATAGAAGGTGGTATAGGAACATTAGTTATAACAAATGCTACAGAATCTGATGCTGGAGTTTATCAGTGTTTGGCAACTAATACAAAAGGGACTGCGATGAGCAAGAAAGCTAATGTTATATGTGCAATAAATGGAGCATTTAAGTCTGTTACGACACCTGAAAATCGCTACGTAATGGAAGGTCACGATATCTCTATGAAGTGTGAACAGCCCTATGTTGTCCCTAAACCTAGTGTGTACTGGACACATGTAGATAAAAATGTAGAAGACCCGTTGCAGGCCAGAGTACATTTAGACGAACGTGTTGCTATAGATTATGAAGGGACCCTTCATTTTGCTAATATTAAAACATCAGACGTGACACCAGATGGTAAATTCATATGTAATATGCACAACTTTATATATAGAACATATAGTGTCGGAGAGGACAAAAAAATCAACGTTTCAGCAAGTCGGTCAGTAAGTCCTGTATCCTTGATGTGGAAATCAAATCCTAACGTTCTTGGCTTAAAGGGAGAACAAGTCAAGTTTATGTGCATATTTTCAGGAAAAAAAACTCCAGAAATAAAATGGAAGAGAATTATTGGAGGGACGAGTAAACCTGTGGAGGAATTAGATGATGGAACCAGAATAAAAGTGACCAAGTCTGGACATGAGCTAATTATCAGTGATCTAGATTATAAAGATAAAGGAGAATATGAATGTAGTGCTACTAATGATATAACTAGTACCCCTGTTAGAGAGAAATTTCAACTTAAAGTGGAAGCAAGACCATATTGGGTAAATAAAGCACCTGCTGATGTAATGATAGGAGTGCAAGAAGATGCAGAATTCCAGTGTATGGTGGATGGTATGCCAAAACCTGTTGTTGAATGGTTTATTGATACCAAACCAATAGCAGAAGTACCCAATCCTAGAAGATCACTTCAGAAACACACACTGAAATTTAAGAATGTATCTGATGCAGACTCACAGGTTATACAGTGTAAAGCTACCAATAAACATGGATCCTTGTTGGCTGATGTGTATTTAAATGCTCTTGCTTTGAAACCAGAAATAACCAAAGGTCCAGGAGAAGTGAAGGTTGCTGAGGGCAATTCTATTACATTGACTTGTGAAAATAATGGGAAACCTGATCCCAAGTTAAAATGGAAGAAAGGTTCACAACCACTCAACACAAAAAGATACGAGTTTATTCACAATGCTATTACTATAAAGAATATAACATATGCAGATGATGGCATGTATACCTGTACAGCCAAAAATACATATGGAGAAGTTGAAAGTACAGGCAAACTTATAGTTAGAAAAAAAACAACAGTTGACTTGAGACCAGCAGAGAGGAATTTAAGAATCGGTGAAAAGGCTACATTTAGTTGTTCAGTCACGTCTGACCATAATGAATTACCGTTCTTAGAAACATCCTGGTTCAAGAATGATGAGCCAATAGACTCTGATGACCCCAACATAGAGATGACAGTAGATATGTTAACGATTTTAAAGATCAGTAGTAAAGATTCTGCCAATTATTCGTGCCATGCTGATAATAAAGTCGACACAGCAACAGCTGTTAGTCAACTCAAAGTTGAAGCTCCACCAGAATCACCAGTTGATTTCCAGATTAAAACATGTGGAAATTTAAATGTAACTTTGATATGGAAACCAGGATTTGATAACTACCTCAACATTACACATTACATCATATATTCAAAAACGTCTTTTGATGCCGACTTCAGCAAAATGACCCAGACCACTGGAAACATCAATGAAGTAGAACTGAAACTGTCGCCATATGCAAACTACACGTTCAAAATATCAGCTGTTAATCAGTTAGGAGAAAGTGTCCAGTCCAATGTTACAAACTATTGTCAAACAAGAGCAGCATTACCTGCCTATAATCCTACAGGTGTTAAAATCCAAGAAGATCAGACAGGAAAATTAGTCATAGAATGGAATGCTATTAAACCTATAAATCAGAATGGTCCAGATTTCAGATATATGATTTATATTAGAAGGAATGGAGAATCTAAAAGGAAATCGTATGAAATTAGGGAATGGGAGGATACTAGGAAAGTGATTGATGTGGGTCATATATATGAAGAATATTCTGTAGAAGTTAGAGCTGTCAATAGGAAAGGAGAGGCAACAGGAACATCATTTGTACACCGTGGACATTCTGGAATGGGAGAACCAAAGGTAGTTCCTAGTAACTTTGAGATAGACCCTGAAGCTCCATTTAGTTACGAATCCATTGGTTTAAGATGGGATCCAGTTGATACATCAGATGAAGCAATGCAAGGCAAATTTTATGGTTATAAAATAAGATACTGGAATATAAATCAACCAGAAAAAATGAAAGAATTAGAGGTTCACCCAGAAAGTACAGATCAGAAGAAAAGACGTAGACGACAAACAGATGTTAAAGTTAGGGCTACAGCTCATCTCCCTCCATACTCTGCTTTACAGTTAGATGTTGTAGCCAGGAACACATATTTTGATTCCAATGGTAGCAATGTTATCAATGTGACAACACCCGAAGGAGTTCCTGGACCAGTTGTTGAATTAGCTGCTAAACAAAAAGGAGGTCATTTTATGATTCTAGAGTGGAAGATACCAAAGGAAGCTAATGGTCAAATAACTGGTTATGATGTTGAATATGAAAAAATTGTCGGAGTAACTACGGTTGAAGGAATGGTGTTGGACAAGGAGACATTTGTGGTAGAATATGAACCAGAATGGGTCGAGGAACACAAGATGTATAGTATCAGAGTGACAGGACTAGAACTTAGAACTCAGTATAGGTTCCATGTGTGGGCTCATACCAATACTGGAAGAGGAGATGAAATGTATGTTGATGGTGTGACTGCTTCTGAAAGTAAACCAACTATACCATATATTCAAGAAGCTATACCAGGGAAGACATTTGTAAATGTAACATGGAAGATTAATAAGAATGATACTGCAGGTTTTAATTACTTTGTGGAATATAGGAAATATGGGGATCATGAATATATAGCTGGACCAAATGAACAGAGAAATAACTGGCAACTTGTTACCAATCTGACCTCTGGACAAACTTATGAAATTAGAGTGGTAGCTAAAAGTGGCAATTATATCTCACCTAGTCCACCAAAAGTGGTAACAACTACAGGAACTGCAGCTGTAGCCTCTGCAGTCTATGAAGCGACATGGTTCATCATAATGATGGTTGTTTTAGCTTTACTCCTTCTTATTTTACTAATTGTGTGCCTTGTAAAACGCAGCAGAGGAGACAAATATCATGTGCAAGAAAAGGAGAAGTTAAGAGGAATAGATAATGATGAAAAGAAAACTGCTCAATATAATGGATTTAATGACAATGGAGAAACACAACCTTTAGCCGGTAGTCCAGATGATTATGACAAAGGCCCCCTAGAAAGTGATAAAGATAGTCTAGAAGAATATGGAGACCCAGACCCTAGTCGTTTTAATGAAGATGGATCATTTATTGGACAATATGGTGCCGAAAAAATGACTGCTTCAGAAGTTGCCGCACCTTCAGCCATGCACACATTTGTCTAG

Transcript

Bpl_scaf_10298-3.11

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13882	Bravo_FIGEY	Bravo-like intracellular region	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR026966	Domain	Neurofascin/L1/NrCAM, C-terminal domain	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0007420	Biological Process	brain development	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098632	Molecular Function	cell-cell adhesion mediator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06756	NRCAM; neuronal cell adhesion molecule	-	Cell adhesion molecules (CAMs)	ko04514	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_10298-3.11 global RNA-seq network