Gene detail

Detailed information of Bpl_scaf_10094-1.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_10094-1.9	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Bpl_scaf_10094	224135	255943	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_10094-1.9

Transcript

Bpl_scaf_10094-1.9

CAGTGTCAGTGGTCACATTTAAAACTGTCCAGGATTGTGACCATCACACCGTTCTTCTTAGTCATCAACAAATCTATACACCATCTTAGGTACATGGAGAAAAATGAGGAGAAAGATTTATGGTTAGATCTAAAGAAAGGTCAGTGTTCTCCATTTTGGCCGTGTACAGACAATGGAAGGATATGTGTCAAGTATGAGAACAGTAACATATCATCATCTTATATCTGTATCAACACTGTACATTCTACTGTACTGAGGATGGAGAGTGGGAGAGCTCTATGTGTGTCAGTAGCTGGTGGTATAGAAGCTCCTAGATCTATAACATTTGAAGATTATGACATAGGAGATTCACCAGTCAGAATAGAAAATCTCTGTGAAGATGTCTTTATTGTAATTCATCAAAGCAATCAACATCAGATGACTGTACTTGGTGCTAATCAGTCGGTACTGTATACTTGGGACGAACCAGCAGGGACCAGAAAACTCATGTGGAATGTGTATGGTGGACCAAACAAACAAGATCAGGAACTAGATATTACTAAGGACAGTTATGATTGTAAGAACCTGTCTGTACAACAGGTCATGGTAGCTGATACATATAAATATAAAGACCAGTCAAACAGAATAGACAGTAGTCCTGATGATGACAGTGATGTTGTAGATACAGTTGACAGCCCACAACATCAGGCCAAGCTGAAGACCAAATCTTACAAGATGACAATGTATTGGGTATCATTCCTAGATGGTCAGCAGAGAGTGGTTTTGTTTACCTGTGATAAAACCATAGCTGAGGCTGCTAGACTGCTGACAGAAGGAGAGCAGGCTAACTATGTGTTCCTATTATCTCTGAGTGGTATAGGCGTATCTATCATCAACATGTCTCAGGAGGAAGTGGCTTACGTCAGCGTGAATAGTATGCCTGCATTGTGGGAAATAGATGTTAAAAATAAATGGAAAATGTTAGAGGATGTTACTCTAGTCACTTGGTTAGAGGACAAGTGGAAACATGCTGTAGAACATGCCAGCTTAGAGGACAGGATAGAGGTTGATTTCAGTAATTTTAGTAAGATGAGGATGATGAAGCCGTACATGGGAGAACTACGGAGGGTGTGTCCTCCAGGGCTGTTCTTCCAATATGGACAGTCAAAACATCAAACCTTTATACATGCTAAAATTCATAAAGTACAGGTGGACAATCAGCTGTTAGATGCCTATTTCCAAACAGCTTTATACTCTTCACCAATACCAATGTATATAGTAAAGAAAAAAGGTCCTAAGCCATTCCTTGAATTTGGTATGATCCGTAGAAGAGTACCGGAAAACAACATAGATACATTTAGACAATTCCAGATAATTATGCAGGAATTACATGTACAGTTAGACTGGGGATTTATAGTTTCTATACAGGATGTATTTGCTTCACTGTTCAATAAGGAAGAATCAGAGAGTGAAAGACTGAGATCAGATTTACTTCTGGCCCAGAGACCACTCCATGAGATAGCATGTGTTATGGCGTCAAAACAACCAAACAGAATATTCTTTGAATTCTTCAAGATATCTCCAATCAAGGTGAATGTCAGTTTTTCCCTGTCTGGTACGCCACATTTATGTCGAGATGAACAGCCATCACTGGCGTCAGACATCAAAGAATTTCTAAGAAATTCTGTTGGAGCTACCCTTACAGAAGTCAAAGATATAGAACTGAAAATGGTGCATTTTGAACATAAGGGTATCCACATAACCAAGGATCAGATGATGACATTAGCCTTAGCTCACTATCGGCAACAGTTGATCATGCAGTTATATGTCATCATACTGGGGTTAGATGTCTTGGGTAATCCCTATGGCCTGTTTAAAGACTTTACCACTGGTATTGGAGAACTGTTCTATGAGCCTGTTATGGATACACTAAGAGGCGATGAGAACTTTTCAGAAAATATGGCAAGAGGTTTCCAGAGTGCTATAGGTCACATCGTAGGAGGAACATCTAATTCAGTAGCCAGAGTAACAGGGTCATTTGGAAATGCCTTTGCATATATGTCATTTGATGAAGAATTCCAACGGAAAAGAAAAAGAAGACAACAGCAACCACCCCGTGATCTACCCCACAGCTTGGCTCTGGCTGGACAGGGATTTCTATCTGGTATCAAATATGGTTTAACTGGAATAGTCTTGGACCCCATACATGGTGCTACTGAAGATGGAGTTGAAGGCTTTTTTAAAGGAATGGGCAAAGGACTATTAGGCTTGATAACCCAGCCTATAGGAGGAGTCCTAGATCTAGTCAGTATGGCATTTGATGGAGTTAGAAGGACAGCAGAAATGGATGGTGGGTTTATTGTTAGGATGAGACTTCCAAGATATATCAATCCTTACAGGGGATTGCAACCATTCTCCCAGTACCTGGCTAGAGGCAGTCATCTGCTGAACTCATTAAAAGGAGGAATTTATTCTAAAACTGATGTATTTATAGACTTTGCACCTCTAAGCTACAAGGAAAGGGCTGATCTTATTATTCTCACTAACAGACATATTCTTTACCTGGACAAAAACAGATTTTCCAGTGGATATGACGTGGAATGGGAGATAGAATTACAGAGTATAATAGGGGTACCAGCTCTGCTTGATGAAGACAAAAAGATTGTTATTACATTAAAGGACAATACAGGGACAGTGTTTTCTGGTAACCATGTAGAAATCTCCAGTGAGTATCCTGGGATTATAAAATGGTTGCTGCAGCGAATAGAACATGTCCTCAAACAACAGATATATAAATGAACAGGAAAGTGGAATACATTTGTATAGACATGATTGTATTCTCTCCAGAATTGTAATAGGGAAAAAACCCACAATTTTGTGAATTATTTCCTGTTTTCACAAAATAATTGTTAAGGAAGAACTCCTGCTTATTTTAATTTTTTTAATTTTTTGGTAGATAGTGAACTTTTATCAGTAGAATTGGAAATTGTTACACATTCCAGTCAGAAATGTTAATCAGAATGACAGTAATATTCTCAGTATATATGTATTTTACTTGTTAATCATGAGTCAATATTTAAAGCTTTATTGTTATAATATATTTTTGCTGTTAATATTTATATATACATGTAAGTCAGTATGTTAATACATAAACCTGGGGTTAAATTATTATGTATTGTAATTTGATGGGGTAAAATATCATTGTTTTCTTTTTTATATTTGTTTTTGTTGTTGTTAAAGTTTGTGAGGGTGAACATTGAGTTCTTGTTATTTTTATACCCCCACTCCACCGGAAGGGGGGGTATACTGTTTTATCTTACTTGTTTTATAAAGTTAGAAGGGGAGATTTTATTTTATTTTATTTTTATTTCGTTAACCAAATTAGTTGTATGATTTTGCAATTAATTTTCTGGTTTATAAAATTAGAAGGGGGTGGTGGTTTATTTATTTTATTTTATTTTATTTCGTCAACCAAGTTTGAGTCGGGTAATTTTTATAATTGAATTTGAATTTTTTTAAATAATTTTTTGTACCTGATTTTAGACAAACAGATATGTTGGCTTTTTATGTAGTCTTATATTTTACATTATCTTGGCTTACCTGGTATACAGGTACATTTAATTTTTATGAGACGGGTCATTGCAACAATAAAAACTGACTTCAGTGTTTTAAACCTCATAACAGGTTATTATTCACATTGGCTGGGGAAGAAAAACCACTTACCATATATTTTAGGTTTTATATGAATGGGACACTGACCGTTTTTATTCATCTTCTAAATCAATGTTTGAAATCCATTTCGATATATATATTTTTTTCATATTTAAATACTCTTTGTTCATTTTACACCATGTTGTTTTTAAACTTTTAGATGCAGATGCTATTTTAATAGATTTCTGAGATTGGAATGAAGCCTCTTTTGTTATATACTGATGTAAACTTGATGTAAAAGTAGTATAGTCAGTACTTGAGGATTGTCTTTTTTTTCTGTCTGTTTTTTTAATTTTTTTTATATATTTTTTGTATATAAATATTAGGTGGAATAGAACCTGCTAATAGATTGTGGAAATATAGATAAAAATAGATGGGAGGTATAAATAGGTATAAATATTAATTTAAGGTGCCCCCAGGTTGATTGTCAGTGTGTTGGGTATTATTGTGAGTTTCAAAATTTATGTAATCAAAGGGAGAAATTTTGTTATAATGATAGGTATTTTTAGGTCATTTTTATGTCATAATTATATAATTATATTTTTTCCCTCGTATATATGTAATTTTTCTTCACTTAACTAAATTAGTACAGCCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06650	VPS13_VAB	Vacuolar-sorting associated protein 13, adaptor binding domain	Domain	Interproscan
PF16909	VPS13_DH-like	Vacuolar-sorting-associated 13 protein, DH-like domain	Family	Interproscan
PF21679	VPS13_C	Intermembrane lipid transfer protein VPS13, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009543	Domain	Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain	Interproscan
IPR026847	Family	Vacuolar protein sorting-associated protein 13	Interproscan
IPR031645	Domain	Vacuolar protein sorting-associated protein 13, DH-like domain	Interproscan
IPR049424	Domain	Intermembrane lipid transfer protein VPS13, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16166	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006623	Biological Process	protein targeting to vacuole	Interproscan
GO:0019898	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053	Biological Process	protein retention in Golgi apparatus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19525	VPS13A_C; vacuolar protein sorting-associated protein 13A/C	-	Membrane trafficking	ko04131	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_10094-1.9 global RNA-seq network