Gene detail

Detailed information of Blon|HiC_5G000022 in Branchipolynoe longqiensis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Blon\|HiC_5G000022	ZINC FINGER PROTEIN ZIC AND GLI	HiC_scaffold_5	1510910	1529873	-

Gene Structure

More details in Jbrowse Sequence

CDS

Blon|HiC_5G000022

ATGAGGACTCACACTGGAGAAAAGCCGCATCAATGTGAGGAGTGCGGTAAGAGATTTAGTGCCTTTGCAAATCTTCAGATCCATGTGAGAATTCACACTGGTGAGAAACCTTATAAGTGTTCTCACTGTGGCACCGCTTTCAGTCATTCAAGTCACCTGAAGAATCATGTCCGGATTCATACTGGACAGCGACCATATGTGTGTGAGGAATGTTGTAAGGGCTTCCGATATAGATCTGAACTAATAAAGCACTCACGAGTTCACACAGGCGAACGTCCTTATTTGTGTTCTGACTGTGGTTCTTTAAAGCTGCACATTTTGACCCATAGCGGAGACAGGCCACATGCGTGTATAGAATGTAGCGAGCGTTTTAAAAAGGCCAGTAGCCTAAGAACACACATGAAGACTCACAAAGGCTTAAAGCCTTACAGCTGCTCTGAATGCAGTAAGGCATTCAGTAAGGCAGGGTCCTTAAACTTGCATATGTTGATACACACTGGCGAGAAGCCTTTCCACTGTTTGGAATGTGGTAAGGTTTTCAGCACGGCAGGCTCCTTGAAAATCCACCGGAGAATTCATACGGGGGAGATGCCGAGCAAGTGTTTGGAATGTGGTAAAGCCTTTAGTACGGCAGGCTCTTTGAAGTTGCATATGAGAACGCATACAGGAGAAAAACCTTATATGTGTTCAGAGTGCACGAAAGCATTCAGTACGGCAGGCTCCTTGAAGGTGCACAAGAGAATTCACACCGGTGATATGCCTTGCAGATGTTCGGAATGTGGTAAGGGCTTTCATTGTGCTGCCAACTTGAAGATACACATGCGGATGCACACTGGGGAGAGGCCCCATGTTTGTTCTGTGTGTGGGAAGGGCTTTATGGTCTCCAACAACCTGAAGACACACATGATAACACATACGGGTGAGAAAGCTTTTGTGTGTTCTACTTGTCAGAGAGCTTTCAGTTGCAGTGGGAATTTGACGGCACACATGAGAACACACACTGGTGAGAAATCTCATCTTTGCACTGAGTGTGGTAAGAGATTTAGCGCTTACGGCAATCTTGAAATCCACATGAGAATTCACACGGGAGAGAAGCCGCACAAATGTCCTCACTGCAGCAGCGCATTCAGTCATTCAAGCCATCTAAAGAAACACATCAGAACGCACACAGGCGAGCGACCTTATGTTTGTGCGGAATGTGGTAAAAGCTTCCTATGTGGGTCTAGGACGGGGAGCACGCAGCTAATCACCAAGCTGGGTGCCATCAGCCCACTCCGAGATGTGCCGATGTCTATCCGCCGGCCGGCCTATATAAACCAGGGCGTTTTCTGCGGACTGCGCGAGGCGCTGTCCGGAGTGTCCCAGGAGGTCGAGATAAAGGACGCGCAGCAAATACAAGGTATGCGCGAGGCCTGCAAGCTGGCCCGACTAGTATTGAACACCGCATCGCAACTGGTGGCACCCGGTGTGATGACAGATCAGATTGATAAGCTTGTGCACGAGACGTGCATCCAACATGGCGCCTACCCGTCTCCACTGCTCTACAGGGACTTCCCCAAGTCGGTCTGCACCTCAGTCAACAATGTCGCTTGTCATGGCATTCCTGATGACCGCCCGCTGCAGAATGGAGATATAGTCAACATTGATGTCACTGTATTTTACCATGGTTTCCATGGTGATGTATCAGACACCTATGTGGTGGGTGAGGCTGCCGACCAGTTGGTAGATTTGGTGAATATCACGCGTGATTCTTGTGACATGGCCCTTGCACAGTGTGGCCCGGGAACACCATTCAACTATATAGGACACATTATTCAGTTCTTCGCTAACAAAAGTGGCTTGAACATTGTTGAGCGCTTCTGCGGACATGGTATTGGCAACTACTTCCACGGACCGCCAGACATCTTCCACTTCGCAAATGAGGAGCCTGGGGAAATGGAGGCAGGAATGACCTTCACAATCGAACCGATTCTGACGCCGGGGAATGGTGCCATTGAAATCTTACCGGATGGCTGGACGGCTGTAACAACTGACAAGAGCTGGACGGCCCAGGTTGAGCACACCGTGCTCATAACGAAGGAAGGCTACGAAGTGTTGACGCGGTAA

Transcript

Blon|HiC_5G000022

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00557	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan
PF13912	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000994	Domain	Peptidase M24	Interproscan
IPR001714	Family	Peptidase M24, methionine aminopeptidase	Interproscan
IPR002467	Family	Peptidase M24A, methionine aminopeptidase, subfamily 1	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036005	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050329	Family	GLI C2H2-type zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19818	ZINC FINGER PROTEIN ZIC AND GLI	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0070006	Molecular Function	metalloaminopeptidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-