Gene detail

Detailed information of Blon|HiC_12G000808 in Branchipolynoe longqiensis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Blon\|HiC_12G000808	LYSINE-SPECIFIC DEMETHYLASE	HiC_scaffold_12	74284254	74319579	-

Gene Structure

More details in Jbrowse Sequence

CDS

Blon|HiC_12G000808

ATGTGGGCGATCAAGGCGTTCCAGCAGGTGCTGTACTCTGATCCCAGCTTCTCACGAGCCAACGAGATCCACATCCGTCTGGGGTTAATGTTCAAGATCAACAACGACCACGAGTCCAGTCTCAAGCACTTCCGGTTGGCGCTAAACGATTCCAGTCCGTCATCTCAGTCTAAGGCTGAAATTCGTTTCCACATCGGGCATCTGTTTGAACAGCAGGGAAAGCATAGGGCCGCCAAGGAAGCTTACGAGGAGCTTCTAGAGATTCCAGATTTACCTGGCGTTATAAAGGCAAACACTCTCCGACAGTTAGGATGGATGTACCACACCATTGAGGTGTTCGGTGAGACTGCGCAAAGAGAAGACATTGCGGTACAATACCTGCATAAGTCGATAGCAGCAGACCAGTCATCAGGACAAACATGGTATTTCCTCGGCAGATGCTTCTCGGCTATTGGGAAGGTACATGATGCGTTTGTCTCCTACCGACATTCGATTGACAAGAGCGAAGCCAGTGCAGACACCTGGTGCTCAATAGGGGTTCTCTACCAGCAGCAGAACCAGCCTATGGACGCATTGCAGGCGTACATTTGTGCTGTGCAGTTAGACAAATCGCACACCGCAGCCTGGACAGATCTGGGCATCCTCTACGAGTCGTGCAGCCAGCCGAAGGACTCACTCACCTGCTACCTGAAGGCGACAAAGAACGCCAAGAAGCCTGCGCTCGTCAACCCCAACATCGCTGCGCGCGTCAAGCTCCTGGAGCAGCAGCTGAGCACCATCTCCGCAGCGGCGCTAGCAGCCAAGGCGCGCACCTTGCCTAGCATCGAAGAGGCGTTCAGCCTCCCCATCCCCGCAGAACTGACGTCCAGACAAGGCGTGGCCAACCCACAGCAACAATCGCGACCCAACATGCTGGGTGGTCAGCAAGCTCCTCAGCTTGTGCAGCCGCCGCTGCCGCCTCAGACGCAAACACAGACTCCGCAGCAGCGGTACGTGCTGCACCAGCCCCCGGGCGTCCATGGGGGTCCCTTCGGGCACCACTCGCACCACCTAGCCAGCCAGCACCAGTCTGAAGAGCTGACGAATCCAGACGCTACCCAGACGCCGCCCTTCTACTTAAACCAACAACAGATGCAGATGCTGCAGTTCCTTCAACAGAATCAGGGAAACCACTTAACACAACAGCAGCAACAGTTGTTGCACCAACTCCAGCAGCAGTACTACATGCAACAGAGCCACCAGCAGCAGCAACAACAGCAGCAACAACAACAGCAACAACAGCAGCAACAGCAGCAGCAGTTGCACCCCTCGCAGGTACACCAGCGCCACCCCCTGGGTGGCCCGCTGCACCACCGACTGCCACTCCCTCACGGTCACTCACCGAATGTCAGTATCCCAAACAGCCACCCCATCTCTTCACCCTATCCGAGCCCCGGTCATGAGCGGCCGCCACAGTTGCCAAGCTATCCGGGTGTCGTGCCACAACACGTATCCCCTGGCATCCGGGGCCCGCCCGCTTACCGCAGCAGTCAAAGCGATGCAATTCACCAGATGCTCAGTCATGGGTCGAGCATGTCAAGCGGGTACGGTGGGGACCCCGGTGGCGGGGACAATAAGGATCCTCAGCAGGGCATGAGCGATCAGGAGCTGACCGCACTCTTGTCACAAGAGGACGTTGCGTCATCACTGGCGGAGGACCTTCTTGCGCAGTTTGGTAACCAAGGCGATAAGTCAAGCCTGCCTGGCACTTCGCGAAGCACCCATGGCATCGACACAAAAACTGGCTTGCACAGTTCGCTGTCGGTCGATCCGCTGACCGGGATTGAAAAGCCGTCCCCATTCTCGCCAACTGCTGGGTTGTATCACCCGGCCACACATTCCAAGCCAGTGTTGAAACAGGAACCCGCTGACGATTGGAGCAACGAGCTGAAGGTTGAGACTGAGCTGAAGAAGATTGCCACCACCGAACCGCCATCTCCCTCCAACATGTCCATCAACATGAGCGCGTCTCAGATCATTGCGGCTTGTAAGGGCATGGGCAAAAATGGGATATCCAACACGAGTATATTGTCCGAGAAGTGCCCACCCCCAATGCCGCCCGATTCTCCGTACCCACCACTGCCTAAGGACAAGCTGAACCCGCCTACACCAAGTGTATATCTGGAGAGCAGAAAAGATGCCTTCTCCATTGAGCTTCAGCAGTACTGCCTGTCCCAGCCTGTCGCCGTCATCCGGGGTCTGGCAGCGGCACTCAAACTCGATCTTGGCTTGTTCTCAACTAAAACACTAGTTGAAGCGAACAGTGACCACCCGATTGAGGTGCGGTCCCAGCGCCGGCTTCCCCCTGACGAGAACTTTGACGAGTCCGGCACGCGGTCATGGCGCTGCAACAGCTCGAGGTCTCACACCAACATTGCCAAGTTTGCGCAGTACCAGGCCGCCTCCTTCCAGGAGTCCCTCAAGGAAGAACAAGACCGCCAGAAGGGCATCTGGAGGGGCGACAAGGAATCCGACAGTGATTCTAACTCTTCTGCACCCAACCGCAAGCGAAAGTTCAAAATGCTCCGCTTCGGAACAAATGTTGATTTGTCCGATGAGAAGAAGTGGAAGCCACAACTGCAAGAATTGGTCAAGCTGCCAGCGTTCACACGGGTGGTGTCTGCGAGTAACATGCTGTCGCATGTGGGCCACACGATCCTGGGCATGAACTCGGTGCAGTTGTACATGAAGGTTCCCGGGTCGCGCACACCAGGGCACCAGGAGAACAACAACTTCTCCTCAGTTAACATCAATATCGGCCCTGGGGACTGCGAGTGGTTCTCTGTGCCCGAGACCTACTGGGGCGTCATCCACCATCTTTGTGAGAAGAACAACATAAATTACCTGAAGGGGTCATGGTGGCCACTCCTTGAAGATCTATATGACCACAATGTTCCAGTCTACCGCTTCATCCAGAAGCCTGGAGATCTTGTCTGGATCGGACCTGGCACGGTCCACTGGGTACAAGCAATTGGCTGGTGTAACAACATTGCGTGGAATGTTGGCGCACTTGTGTGGAAGCAATACCAGGTGGGCGTTGAGCGTTACGAGTACAACAAACTTCAGAGCTACAAGTCCATCGTACCCATGGTGCACATGTCGTGGAACCTGGCCAGGAATGTCAAGGTCACCGACCCCAAGCTCTTTGAGATGATCAAATACTGCCTGTTACGAATGCTCAAACACTGCCAGCTCATCATTGACTACGTGAAGGATCTGGGCAAGGACCTGGTTTGGCATGGCCGGCAAGTCGGAGAGGGCGCCCACTACTGTAATAACTGTGAAATCGAAGTCTTCAACCTGCTCTTCGTTATCGAGCAGGAAAAGAAGCATGTGGTGCATTGCTTAGACTGCGCGCGCAAGATTAATCCACGTCTGGAGGCTGTGACCGTGCTGCACCAGTTCAAGATGGAGGAACTGATGAGCTTGTATGACAACTTCCAGCTCGGCACTGTGAATCAGGTCCCTACCCTCCCAGCTCCTACTACCACCACCATCACCACATGA

Transcript

Blon|HiC_12G000808

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02373	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF21322	KDM6_C-hel	Lysine-specific demethylase 6/UTY, C-terminal helical domain	Domain	Interproscan
PF21326	KDM6_GATAL	KDM6, GATA-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003347	Domain	JmjC domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR046941	Homologous_superfamily	Lysine-specific demethylase 6, GATA-like domain superfamily	Interproscan
IPR048560	Domain	Lysine-specific demethylase 6A/B-like, GATA-like	Interproscan
IPR048562	Domain	Lysine-specific demethylase 6A/B-like, C-terminal helical domain	Interproscan
IPR051630	Family	Transcriptional Corepressor and Histone Demethylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14017	LYSINE-SPECIFIC DEMETHYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0031490	Molecular Function	chromatin DNA binding	Interproscan
GO:0044666	Cellular Component	MLL3/4 complex	Interproscan
GO:0071557	Biological Process	obsolete histone H3-K27 demethylation	Interproscan
GO:0071558	Molecular Function	histone H3K27me2/H3K27me3 demethylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-