Gene detail

Detailed information of Blon|HiC_12G000579 in Branchipolynoe longqiensis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Blon\|HiC_12G000579	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	HiC_scaffold_12	54952463	54974458	-

Gene Structure

More details in Jbrowse Sequence

CDS

Blon|HiC_12G000579

ATGGTGGAAATAAGTGGGTGCCAGCAGCGTCCTCCCTCCCTGCCTTCCTACCCCCGACCCACTCGGCCGCGCATGGGAGGGGTGGCGGCTGGTAGGGGGAGGACAGGGCGACTCCCGCCTGTGACTAACATTCACCCTGTTTCAAATAAAACTATAAAATTATATTTCAGTCACAAGCATTTAAAAGCAGTACGCAAGAAGGAAAGGAGAAAAACCAAAAGAAAACAGGCTGCTCAAAAAAGAGATGCACAGACACACCAAGCTGATGCTACGTGTGATTCCACGTTCCATCGTATCCGACGGATCAGGGAAGAGGAACAAGAGAAGTATGAGGAAGAATGCCATGAACGACAAAGACAGTTGCAACACACACTGTGGATTGAGCGAGAGCGATTGGCGCTCCAGCAAATAGCAGAACGTAAGCGCCAAGAGGAGATCTTCGCACAGAAGCAGGAGGAGGAGGAGCGACGAATAAGAGAAGAATGGCAAGAGCGGCAACAAAAGGAAAAGGAGGAGCAGAAAGAACGCGAAGAGAAGGAAAAGGCTAAGAAAGACAAGAAGGAGGCCTTGATGAAGGAGGCTAGGTCTGGTGAGAAGGGTAAGGATGGCGGCAGCTGGCACAACCCCTTGGCCCCGGCCAACTATGGTCAGGAGCAGGAGGTGTGTCCCTTCTTTGCGAAGACTGGAGCCTGTAGATATGGCGAGCGGTGTTCCCGCGCCCACCCGTTCCCCAACACCAGCTGCACTCTGCTGGTCAAAGGAATGTACGCCCACTTCTCACTCATGGAGGGTCTCCAGGACGAGTTTGACCTCGATATCACGTTGGAGTACGAGGACCGTGAGACTTACCAACACTTCCGAGATTTCTATGATGACGTACTTCCGGAGTTCAGAGCTATCGGCAAGGTGATGCAGTTCAAGGTCTGCTGTAACTACGAGCCACACCTCAGGGGCAACGTCTACGTCCAATACAGAAGGGAGGAAGACGCGCATCTGGCGTTCGTTCGATTCAATGCCCGGTGGTACGCAGGTCGCCAGCTGCAGTGCGAGTTCTGCAGCGTCACCAGATGGAAGAACGCCATCTGCGGTCAGTTCAGAACAAAGAAGTGTCCAAAGGGCAAGAACTGCAACTTCCTGCACGTCTTCCGGAACCCCGACGGGGAATTCTGGGAGGCGGACCGCGACTACGACCTGTCGGAACCACGCAGTGACCGCCACTACAACTGGAGCCGGCGCTCCTCTCTCCCCAGGGACCGGCCTCGCCTGCCCAACTGGGACCGGCAGAGGTCAGCTCGAAGGTCACGGTCAAGATCACCGGACCGACGGAAACGCCGGCGGTCAAGGTCGCCGAGTCGAAGGTCAACGCAACCACGGTCACGGACGCGCTCCAGGTCGCCTAAGGAGGAGCGGAGCGCCAGGAGTCATAGGAGCGCCAGGAAATCTAGGTCAAGGTCGCCGCATAGGGCTAGCTCACGGTCAAAGGGTCGGGAGTCGCGGACAAGGTCGAGGACCTCGGTGGAAGGCGCTGCCGGAAGGACGGACAGCAAGTGGGACAGTGACTCTGAGAGTGACGACGCGGACAGAGACAACCGCTCCAAGCGGAGCTTTAGTCAGCACCGGATAAAGGAGCTGTGTGCGCCCAGTGTGAACGGCTCGCGTCACGCCTCGTTGTCACCGTCCGAACAGCGGCCAGGGTCACCGGAACGCGCAGCGTCAAGATCTTCGTCGCCCGAAGATAGAAAGCACAAACACAAGAAGCACAAAAAACACAAGCACAGTCACCACAAGAAGAACGGGCACACTGAAGCGTCCGCTAAGAAGCGGCACCCCGCGTCGTCGGCGAAGCGAGCCGCTGCACCATCCCCGAACTGCATTGTGGGTATTATAAATGGCGCGAGCGGCAACAGGCGGGATGAGCTGGACACGATCCAGAAGCACTGCATAGAGCAGATAAAGGACTGCATAGAAAAGGCCAAGAGGGACACGGCACAGAACGGGCAGAGTCCGATCCACAATGGGGATCCCTCCTCCCCGGGGGCGCCGGCCCTCACGGCCGGAACGCCCGCCGAGGGAGCCGAGCCCTGTCTGTCTGTCGGACCCTGA

Transcript

Blon|HiC_12G000579

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-CCCH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR009145	Family	U2 auxiliary factor small subunit	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0030628	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0089701	Cellular Component	U2AF complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-