Gene detail

Detailed information of Ama38806 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama38806	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	scaf2	1002589	1006227	-

Gene Structure

More details in Jbrowse Sequence

CDS

Ama38806

ATGAGTAGCCTTAAGGATTTGACAGTCCTAGGAAAGGAGCTCGGGTATAAAGATGATGAACTTAGGAAGTTTGTTTCAGAGGAACAAGAGAAAGAAAGACTGGCCCGAGGGAATGAGAGACAGGCTGAGAAGGAGAAAATAGAGCTAGATAGAGCAGCAGAGAAACATAAGTTAGAAATAGAACTAGAGGTGAAGAAAGATAAAATAGAAGCCGACCGAGTTAGAGCAGATGAGGAACATAAGAGAGCTTTAGAAGTAGCTGGTATGGAACATCAGAGAGCCATAGAGTTAGCAGAGTTCGCTAAGGACAGTAAGCCTAGTGTAACAAAGTCAGGGGGTGTTAGTCACGTGAAAGGGCCAAAATTACCTCCCTTTGAGGCAGACACGGATAACATGGATAGTTATTTGTCGAGATTTGAACGCTACGCGCAAGTCCATGGTTGGGAACCAAATCAGTGGTCCCTGCATTTAAGTGCATTACTAAAGGGAAAAGCTCTAGATGTGTATTCCAGGTTACCATTTGATGACTCTCGTGACTATGATAAGCTTAAGGTAGCATTACTTAAACGGTTTGAGCTAACCGAGGAAGGATTCCGAACCAGGTTTAAATTTGCTAAACCGGAGAAAGGGGAAACGTTTGTTCAGTTTTTAAGGCGGTCTGGGAACTATTTAGATAGATGGCTAGAATTAGGACATGTAGAGCAGACGTATGAGGCGGTGACAGATTATTTGATCAGAGATCAGTTGCTTGGTATATGTAGTAGAGAGTTGTATGTATTTCTCAAGGAGAAACAGTTTACCCAGTCCAATGACATGGCTATACAAGCAGATTTGTTCTCGGAGGTCAGAGGTGGTGCTCAGAATGTAGTAACCCGAGATAGTAAAGGTTTTAATGGAAGTAAGACACCTACTCCTATATTTCCTAGGCAGAATAGAGACTATAGTAGGAAGGTCGCACCATATAGGAAGTGTAATAACTGTGGGATGACTAATCACAGAGCTGAAGACTGTAGACGGAGGAATGATAAGGTAGCGATGGTGTCAGATGAACGCCCGAATAGCACCTTTTATGAGTTTAGAGGTAGAGGAAACTTTAGGCCACGTAGTCGTCTTAGGGGTAGAGGTAGAGGTTATCCTCCTCGTGGTGAAGGTAACTGTTGTGTGTCAGATACAGATGATACATGGGATGAGTTGGGAGCTTTAAGTGATAGGAATTGTCCGTCCAAAGCCGGCAGATTGAATGGAAGACCGGTAGAGGTGATGCGTGATACGGGAAGTACTTGTGTTGTAGTGAGGCGTGAGTTAGTGGCATCAGACCAGTTTCTGGGGAAAGATAGAGCGTGTCGATACATTGATGGTAGTGTTAGATATTTTCCGCTAGCAATGGTAGAGATTGACTGTCCGTACTTTAGTGGGCAAACAGAGGCGTTATGCGTAGACAATGCAATGTATGATGTTGTGTTAGGGAACATTGCAGGGGCAAAGTATCCAGAGTCTAATGATGTAGTGGTACAGGCTGTAGAGACACGGTCACAGGCTAAACAAAAACCGTATCGTAAATTGGGTGTCCCTAGTCCAGTGTTAGATATGTCCAGCCGGGAATTTGCGGAAAAGCAGACTAATGATAAAGGGTTAAATAAACTTAGGAGCTTAGCGAACACAGGGGAAGAACGAAAATGTAAGGGATCAGGGACAGTAAAATTTGTCTTGAAGCGGTCTTTAATGTATCGGGAATTTAGTTCTCAGGATGAGAGGAAGTCGCATCAGTTAGTTGTACCAACTGAGGGTAGGGAAGCTGTGCTTAAGTTGGCACATGACTCTCTCATGGGAGGACATCTGGGGATTAGGAAGACCATGGATAGGGTCTTATCAGAGTTTTATTGGCCCGGGGTTGGCATGGACGTAACTAGATATTGTAGGTCATGTGACATTTGTCAGAGGACCATTTCCAAGGGAAAAACAATGAAAGTTCCGTTGGGGTATATGCCTTTTATTGATATTCCTTTTAAAAGGGTAGCTGTAGATATAGTAGGACCTATTGAACCTATGACGGATAGGAAGAATAGATACATCTTAACCATGGTTGATTATGCTACAAGGTATCCGGAAGCGATTGCTTTACCCAGTATAGAAACCGAACGTGTAGCTGAGGCACTTGTAGACATGTTTAGCAGGTTAGGTGTACCAGAGGAAATGTTAACAGATTGTGGAACACAGTTTACATCTGCGATGATGAAGGAAGTCAGCCGACTACTATCAATGAAGCAGTTGACCACAACCCCATACCATCCGATGTGTAATGGACTCGTGGAGAAATTTAACGGAACGCTGAAGCAGATGCTACGACGAATGTGCGCAGAAAGACCGAAAGATTGGGACAAATTCATCAACTCTATGTTGTTTGCTTACAGAGAAGTACCTCAGGAGAGTTTGGGTTTCTCGCCTTTTCAGTTATTGTACGGCAGGAAGGTGAGAGGACCGATGTACATTCTCAAAGAATTATGGTCAAAAGATGTCGGGGATGCAGAAGTCAAGACGACATACCAGTATGTGTTAGACTTACAAACGAGACTAGAAGAGACATGTAAGATGGCACAGGACCAGTTGCGGAAAGCGAGTGGTAGATACCGGAAGTACTACAACAGGAAGGCTAGGAATCGTAAGTTTGTAGTGGGAAATCAAGCCTTAGTGTTACTTCCGGTGAATCACAATAAACTTTTATTGCAATGGAAGGGTCCATATGAAGTTAAACAGGTGCTGAATGAATTAGACTATAGGATTGATGTAGAAGGGAAGCTCAGAACTTTTCATGCTAATATGTTGAAGCTTTACACAGAGAGAGAAGCACAGAGACATGACGGTGTACTGACAGTAGTGTGTGCTACAGTTATTGATGAGTGTTTGGGACACGTGATCGGTGAGGAACACACCCTGAAACCAATACCATCAAAAGTCCAGAGTGTACAGGAGGCAACGAGACCACGTACCAAGAAAGCTGTTAAGTCATTTTTAGGAGTAGTAGGATTTTACCGGAAGTTTATTCCAAACTTTTCAGCGATTGCAGTACCTTTGACCGATCTGACGAAAAAAGGACAACCAAACATAGTTGAATGGGGTGAACCCCAAGACAACGCATTTAAGACACTTAAACTTAGGTTAGTGGGTCCACCGATTCTGAAATTGCCAAATTTAGATGAACCATTCATTCTAAGAACAGATGCTTCAGATTGTGGGTTAGGAGCGGTGTTGCTTCAGGACCAGAATGGGGAAAAACTGCCAGTTGCGTATGCTAGCAGGAAACTACTTCCCAGAGAACGGAACTACGCCGTGATTGAGAAGGAATGCCTGGGAGTGGTGTGGGGAGTCAACAAGTTTCATCGATACTTATATGGGAAAGAATTCCTCCTTGAAACAGACCATCAACCAATGACGTATCTCAACAAAGCAAAGATGGCAAATGCTAGACTGATGAGATGGGCTTTGGCACTCCAACCGTACCGAATGAGAATCATGGCTATTCCGGGACGTGAGAATATTGGAGCTGATTATCTCAGTCGCTTGTAA

Transcript

Ama38806

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038269	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46888	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-