Gene detail

Detailed information of Ama36056 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama36056	COATOMER SUBUNIT GAMMA	chr11	9022666	9041691	+

Gene Structure

More details in Jbrowse Sequence

CDS

Ama36056

ATGGGTGCACTTCCTGGACAGAACCCGCAATTCGGGGCCCAATCGTCTTTCACTGTACATTTCTTCATCCCGGAAGTGGAGAGCGTCGGGTGTGTAAACACTCGCGATTGTGGTTTACTTGACACCGTGCAACGGTTTGGAGCAGAAGTTGACTGCTCTGTACTGGAGTTTGGAGCAGAACTTGACTGCTCTGTACTGGAGTTTGGTGCAGAAGTTGACAGCTCTGTACGGGAATTTGGAGCAGAAGTTGACTGCTCTGTACTGAAGTTTGGTGCAGAACTTGACAGCTCTGTACAGGAATTTGGAGCAGAACTTGACAGCTCTGTACAGGAGTTTGGAGCAGATACTGAAGCAACCGTTAGAGTGCTTGGAGCAGATACGAAATCCTTCGTACAGAAACTTGGAGCAAATAGTGGCCCCTGGTCAATCGAGAATTCATCGGAATTAGGGGGACAGGAATTGGAGTTGAAGAAACGAGGTGCTAAGGATGTTGTCCGTGTGTGTGAGCCAACATACAGGACTGACAAGCTTGATATGGAAGGCATTAGGGTCCTGAGAGCGGATGCATTGAACACACCAATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAAGAGCGGATGCATTGAACACACCATTACCCAGTACCACATACATAGATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGATTGCAGGTGTAAGGAGCCAGGGGACACGGTATCTTCTAAGCTCTCGGAGAAGGTGGCCGCATCAAGACAAGATGTGTATGCAGAGCAACTTGCTGGTGTACCAGAGTTTGCCAACCTTGGATCCTTGTTCAAGTCCTCGAGCCTGCCGGTGGAGCTGACAGAGTCTGAGACTGAGTATGTGGTACGCTGCGTGAAACATACATACTCCAGATACATTGTGTTCCAGCTGGAGGATGTTGAAGTTGCTGTCGGCGACCACGTGCAGAAGGTGATGAAGCCCAACTTTGGTGCATCATGGGACGAGGTTGGCCCCGATAACGAGATGGAGGATACTTACGCGCTCTCTACAATGAAAACTTTAGAAGATGCGGTCAAAAATATAATACAATACCTAGGCCTGCAGCCTTGTGAGAGGTCGGACAAAGTTGCTGAAGGAAAGAGTTCCCATACTCTGTATCTAGCCGGAGTGTTTCGAGGAGGGCATGATGCGCTTGTGCGTGCTAAGCTGGCTATGGCAGATTCGGGTGTTACCATGCAGCTGACAGTTCGTTCAACTGATCCCAGTGTTTCTGAAGTCCTTGTTTCAGCCATTGGTTAA

Transcript

Ama36056

GGCAGTCAGTTACCTACTAGATCGTTAATCTCTCTCCCACCCCCCACCCATGGAGCTGTCGAGAGGCGCTTCTATTTGGGAACTATATAAATTTGTATGTATTTCAGGTGCTAAACTTTCTTCCTTTTGGATGCGCTACTTGGACCTCGATCCCCCGTGATCTTGTAACCGGCATTCTGGATGGGGTAAGGTGTGTTTGGATGGGTGCACTTCCTGGACAGAACCCGCAATTCGGGGCCCAATCGTCTTTCACTGTACATTTCTTCATCCCGGAAGTGGAGAGCGTCGGGTGTGTAAACACTCGCGATTGTGGTTTACTTGACACCGTGCAACGGTTTGGAGCAGAAGTTGACTGCTCTGTACTGGAGTTTGGAGCAGAACTTGACTGCTCTGTACTGGAGTTTGGTGCAGAAGTTGACAGCTCTGTACGGGAATTTGGAGCAGAAGTTGACTGCTCTGTACTGAAGTTTGGTGCAGAACTTGACAGCTCTGTACAGGAATTTGGAGCAGAACTTGACAGCTCTGTACAGGAGTTTGGAGCAGATACTGAAGCAACCGTTAGAGTGCTTGGAGCAGATACGAAATCCTTCGTACAGAAACTTGGAGCAAATAGTGGCCCCTGGTCAATCGAGAATTCATCGGAATTAGGGGGACAGGAATTGGAGTTGAAGAAACGAGGTGCTAAGGATGTTGTCCGTGTGTGTGAGCCAACATACAGGACTGACAAGCTTGATATGGAAGGCATTAGGGTCCTGAGAGCGGATGCATTGAACACACCAATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAAGAGCGGATGCATTGAACACACCATTACCCAGTACCACATACATAGATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGTACCACATACACAGAATGACTTTAATGAATTGCCCACACTGTATGTCTCGGCCCAGAGAGCGGATGCATTGAACACACCCATTACCCCAGATTGCAGGTGTAAGGAGCCAGGGGACACGGTATCTTCTAAGCTCTCGGAGAAGGTGGCCGCATCAAGACAAGATGTGTATGCAGAGCAACTTGCTGGTGTACCAGAGTTTGCCAACCTTGGATCCTTGTTCAAGTCCTCGAGCCTGCCGGTGGAGCTGACAGAGTCTGAGACTGAGTATGTGGTACGCTGCGTGAAACATACATACTCCAGATACATTGTGTTCCAGCTGGAGGATGTTGAAGTTGCTGTCGGCGACCACGTGCAGAAGGTGATGAAGCCCAACTTTGGTGCATCATGGGACGAGGTTGGCCCCGATAACGAGATGGAGGATACTTACGCGCTCTCTACAATGAAAACTTTAGAAGATGCGGTCAAAAATATAATACAATACCTAGGCCTGCAGCCTTGTGAGAGGTCGGACAAAGTTGCTGAAGGAAAGAGTTCCCATACTCTGTATCTAGCCGGAGTGTTTCGAGGAGGGCATGATGCGCTTGTGCGTGCTAAGCTGGCTATGGCAGATTCGGGTGTTACCATGCAGCTGACAGTTCGTTCAACTGATCCCAGTGTTTCTGAAGTCCTTGTTTCAGCCATTGGTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08752	COP-gamma_platf	Coatomer gamma subunit appendage platform subdomain	Domain	Interproscan
PF16381	Coatomer_g_Cpla	Coatomer subunit gamma-1 C-terminal appendage platform	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009028	Homologous_superfamily	Coatomer/calthrin adaptor appendage, C-terminal subdomain	Interproscan
IPR012295	Homologous_superfamily	TBP domain superfamily	Interproscan
IPR013040	Domain	Coatomer, gamma subunit, appendage, Ig-like subdomain	Interproscan
IPR013041	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR017106	Family	Coatomer gamma subunit	Interproscan
IPR032154	Domain	Coatomer subunit gamma, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10261	COATOMER SUBUNIT GAMMA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0005198	Molecular Function	structural molecule activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005793	Cellular Component	endoplasmic reticulum-Golgi intermediate compartment	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0009306	Biological Process	protein secretion	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan
GO:0030126	Cellular Component	COPI vesicle coat	Interproscan
GO:0072384	Biological Process	organelle transport along microtubule	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-