Gene detail

Detailed information of Ama19175 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama19175	DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN	chr13	31509761	31533755	+

Gene Structure

More details in Jbrowse Sequence

CDS

Ama19175

ATGTTTGGTGACTACATGAACCCCGACGCAGTAAGCGAAGAACGGGTATACGACGAGGTTCGCTCCCTTGATGAAATGTACACGATCATAGAGCAGTGTCTCGATGAATATAACAACACACACAAGAACAGAATGAACCTCGTTATCTTCAGATACGTACTGGAGCATCTGTCCCGTATCAGTCGTGTGTTACGAGTGCCTGGCGGTAACGCCCTCCTTGTTGGTGTGGGTGGTAGTGGAAGGCAATCCCTGACTCGTCTAGTCACTGCTACGGCAGGATATGGTCTGTTTCAGCCAGAAATCTCCAAGAACTACGGGAAACCAGAATGGCGGGAAGACCTCAAGAATCTGTTGAAGCAAACGGGTGCCGGTAAGACGATAGTGTTCCTGATCACAGACACTCAAATCAAGGAAGAGTCATTCCTAGAGGACATTGACAATCTGCTGAACACTGGAGAGGTCCCTAACATCTTCGCTACTGATGAAAAGGCAGAGATAATGGAGAGTATACGTCCAGCTATGCAGGCCCAGATGGAGTTGGAAGGAAAAGGTGGGGATGATTTCTCTCCCCTTGCTATGTTTGCGTTTTTCGTGAATCGTGTGAAGGAGAATCTGCATATCATCATTGCCTTCAGTCCGATCGGCAACGCCTTCAGGACCCGTATGCGCCAGTTTCCCTCACTCATCAACTGCTGTACCATTGATTGGTTCCAGGCTTGGCCAGATGATGCATTGGAGAGAGTAGCCAACAAGTTTCTGGAGCAGCTCGACATAGAAGATGACCAGAAAGTCGAGACTGTTATAATCTGCAAGCACTTCCACCAGAGTACAGTCTCCTTGTCGACGTCTTATCTGCTGGAACTGGGACGACATAATTATGTGACACCGACATCATACTTAGAACTGATTAATTCTTTCAAAATACTGCTAGGGTCAAAGCAACAGGAGACAATAAAAGCAAAGAGAAGATACATTGTAGGACTTGAGAAACTTGCCTTTGCTGCAAGTCAGGTGGCTGACATGCAGAAGGAGTTGGAGGAACTACAGCCTCAGTTGGTTGTGTCAGCTCGGGAAAACTCTGAGATGTTGATCGTGATCGAGAAAGAGTCATGCGAGGTGGAAGCAACAAGCAAGCTTGTGAAATCTGATGAACAGGTCGCAAATGAACAGGCTGCGCAGTCCCAGGCATTGAAGGACGAATGTGAAGCTGATCTGGCCGAAGCTATTCCAGCACTCGAGGCTGCTCTTACTGCTCTCAACACTTTGAAGCCTTCTGATATTACCATTGTGAAATCGATGAAGAATCCTCCAGCCGGTGTGAAGATTGTCATGGCCGCCGTCTGTGTTATGAAGGACGTCAAGCCAGACAAGATCAATGATCCAGACAAGCCAGGACAGAAGATCGTAGATTACTGGGGACCGTCAAAGAAATTGTTGGGAGACATGAGTTTCCTGAGCATGCTTAAAGAGTATGACAAAGATAATATTCCCGTTCATGTAATGCAGAAGATCCGTAAGGAATATATCGGTAATCCAGATTTTGATCCTGTTAAGGCTGCCAATGCCTCATCTGCAGCTGAAGGTCTGTGCAAATGGATCATGGCTATGGAAATCTATGACCGTGTTGCCAAAGTTGTTGCGCCCAAGAAAGCACGTTTGGCAGAAGCCGAATCTGAACTCAGTGTTACAATGAAAACTTTGAATGCCAAGCGAGCAGAGTTGGTTGCAGTTGAAAAACGTTTGGCTGACCTGCAGGCTACATTTAGTGAGATGACGAACAAGAAGGAACAATTAGAGTTCCAGGTGGATCTTTGCGGCAAGAAATTGATTCGTGCAGAGAAGCTGATCGGTGGTCTTGGAGGCGAGAAGAGTAGATGGACAAAAGCTGCCGAACTGTTACAGAATACATACGACAACCTGACTGGAGATGTGCTCATCGCCGCTGGTGTCATTGCTTACCTCGGTCCATTCACGTCAGCATTTAGAGAACGGGCGGCGACAGATTGGGTCAACGAATGCACTAAACGAAATATCCCATGTTCAAAGGAGTTCTCCCTGAGCAAATGTCTTGGGGAACCTATCAAGATCCAGGCATGGAACATCTTTGGTCTACCAAGAGATGCATTCTCTATCGATAACGGTGTAATTGTGGCTAACTCCAGGAGATGGCCATTGATGATTGATCCACAAGGCCAGGCGAACAAATGGGTGAAGAATATGGAGAAAGAATTCAAACTGTCAGTAATCAAGCTGACCGACTCAGACTACATGAGAACACTGGAGAACTGTATCACATTCGGTAATCCGCTGATTCTGGAAAATGTGGCAGAAGAACTAGATCCTTCCCTAGAACCATTACTCTTGAAGCAGACGTTTAAGCAAGGTGAGTTGTGTTTCATGTGA

Transcript

Ama19175

ATGTCGCGTCTGGATAAGAGAAGGAAGGGCGTGTACGGTCCACAGATGGGAAAGAGAGCCATTATCTTCGTTGATGACTTAAACATGCCACAGAAGGAGGTGTATGACTTAAAAGATACCACTAAGATCACCCTCCAGGACATGCAGTTCTTCTGTGCCATGGGACCTCCAGGTGGAGGCCGGAACGATGTGACACCGCGGTTCCTCCGCCATTTCAACATCATCGGAATGAACCAGTTCAGCGATGAGACCATGACCAAGATCTTCTCCGTCATCATCTCCACCTATCTCAGGTGTGAGCTATGAGCTGTAAAGACCTCATCCAAGGACTTCTTCAAGGAGACTTTTGATTCCCTGTTTGAGCACCTGGTACCAGACGGAGGACAGGTGAAAGAAGAAGATTTGCGAAGTTTGATGTTTGGTGACTACATGAACCCCGACGCAGTAAGCGAAGAACGGGTATACGACGAGGTTCGCTCCCTTGATGAAATGTACACGATCATAGAGCAGTGTCTCGATGAATATAACAACACACACAAGAACAGAATGAACCTCGTTATCTTCAGATACGTACTGGAGCATCTGTCCCGTATCAGTCGTGTGTTACGAGTGCCTGGCGGTAACGCCCTCCTTGTTGGTGTGGGTGGTAGTGGAAGGCAATCCCTGACTCGTCTAGTCACTGCTACGGCAGGATATGGTCTGTTTCAGCCAGAAATCTCCAAGAACTACGGGAAACCAGAATGGCGGGAAGACCTCAAGAATCTGTTGAAGCAAACGGGTGCCGGTAAGACGATAGTGTTCCTGATCACAGACACTCAAATCAAGGAAGAGTCATTCCTAGAGGACATTGACAATCTGCTGAACACTGGAGAGGTCCCTAACATCTTCGCTACTGATGAAAAGGCAGAGATAATGGAGAGTATACGTCCAGCTATGCAGGCCCAGATGGAGTTGGAAGGAAAAGGTGGGGATGATTTCTCTCCCCTTGCTATGTTTGCGTTTTTCGTGAATCGTGTGAAGGAGAATCTGCATATCATCATTGCCTTCAGTCCGATCGGCAACGCCTTCAGGACCCGTATGCGCCAGTTTCCCTCACTCATCAACTGCTGTACCATTGATTGGTTCCAGGCTTGGCCAGATGATGCATTGGAGAGAGTAGCCAACAAGTTTCTGGAGCAGCTCGACATAGAAGATGACCAGAAAGTCGAGACTGTTATAATCTGCAAGCACTTCCACCAGAGTACAGTCTCCTTGTCGACGTCTTATCTGCTGGAACTGGGACGACATAATTATGTGACACCGACATCATACTTAGAACTGATTAATTCTTTCAAAATACTGCTAGGGTCAAAGCAACAGGAGACAATAAAAGCAAAGAGAAGATACATTGTAGGACTTGAGAAACTTGCCTTTGCTGCAAGTCAGGTGGCTGACATGCAGAAGGAGTTGGAGGAACTACAGCCTCAGTTGGTTGTGTCAGCTCGGGAAAACTCTGAGATGTTGATCGTGATCGAGAAAGAGTCATGCGAGGTGGAAGCAACAAGCAAGCTTGTGAAATCTGATGAACAGGTCGCAAATGAACAGGCTGCGCAGTCCCAGGCATTGAAGGACGAATGTGAAGCTGATCTGGCCGAAGCTATTCCAGCACTCGAGGCTGCTCTTACTGCTCTCAACACTTTGAAGCCTTCTGATATTACCATTGTGAAATCGATGAAGAATCCTCCAGCCGGTGTGAAGATTGTCATGGCCGCCGTCTGTGTTATGAAGGACGTCAAGCCAGACAAGATCAATGATCCAGACAAGCCAGGACAGAAGATCGTAGATTACTGGGGACCGTCAAAGAAATTGTTGGGAGACATGAGTTTCCTGAGCATGCTTAAAGAGTATGACAAAGATAATATTCCCGTTCATGTAATGCAGAAGATCCGTAAGGAATATATCGGTAATCCAGATTTTGATCCTGTTAAGGCTGCCAATGCCTCATCTGCAGCTGAAGGTCTGTGCAAATGGATCATGGCTATGGAAATCTATGACCGTGTTGCCAAAGTTGTTGCGCCCAAGAAAGCACGTTTGGCAGAAGCCGAATCTGAACTCAGTGTTACAATGAAAACTTTGAATGCCAAGCGAGCAGAGTTGGTTGCAGTTGAAAAACGTTTGGCTGACCTGCAGGCTACATTTAGTGAGATGACGAACAAGAAGGAACAATTAGAGTTCCAGGTGGATCTTTGCGGCAAGAAATTGATTCGTGCAGAGAAGCTGATCGGTGGTCTTGGAGGCGAGAAGAGTAGATGGACAAAAGCTGCCGAACTGTTACAGAATACATACGACAACCTGACTGGAGATGTGCTCATCGCCGCTGGTGTCATTGCTTACCTCGGTCCATTCACGTCAGCATTTAGAGAACGGGCGGCGACAGATTGGGTCAACGAATGCACTAAACGAAATATCCCATGTTCAAAGGAGTTCTCCCTGAGCAAATGTCTTGGGGAACCTATCAAGATCCAGGCATGGAACATCTTTGGTCTACCAAGAGATGCATTCTCTATCGATAACGGTGTAATTGTGGCTAACTCCAGGAGATGGCCATTGATGATTGATCCACAAGGCCAGGCGAACAAATGGGTGAAGAATATGGAGAAAGAATTCAAACTGTCAGTAATCAAGCTGACCGACTCAGACTACATGAGAACACTGGAGAACTGTATCACATTCGGTAATCCGCTGATTCTGGAAAATGTGGCAGAAGAACTAGATCCTTCCCTAGAACCATTACTCTTGAAGCAGACGTTTAAGCAAGGTGAGTTGTGTTTCATGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12777	MT	Microtubule-binding stalk of dynein motor	Domain	Interproscan
PF12780	AAA_8	P-loop containing dynein motor region D4	Domain	Interproscan
PF12781	AAA_9	ATP-binding dynein motor region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024317	Domain	Dynein heavy chain, AAA module D4	Interproscan
IPR024743	Domain	Dynein heavy chain, coiled coil stalk	Interproscan
IPR026983	Family	Dynein heavy chain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035706	Domain	Dynein heavy chain, ATP-binding dynein motor region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46961	DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0030286	Cellular Component	dynein complex	Interproscan
GO:0045505	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-