Gene detail

Detailed information of Ama17867 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama17867	DEATH DOMAIN-CONTAINING PROTEIN	chr10	60390553	60428507	-

Gene Structure

More details in Jbrowse Sequence

CDS

Ama17867

ATGGACATGTCTTCACCTGTGCAAGAAATTGACGGAACTCCGATTGATGTTGTTCAACTAGATAAAACATTCGGGGTATGGGTACACACAGGAAGGAAGATCACCATTTCACCAAGCGATAATTCTTATGTTCAAAAGAAGCTTACAGATCCACATGTATATCCCATATCCAAACATATTCGGGGTAAGGTCATTCTCATATCCAACACGGGATACCAAGCACTTCGGCTTCTCAAGGATCTCTTCATGCAGATGAGCTACAAGATCGCAATATTCACGGAAAAGACTAGCGAGGAAATGTATGAAATAGTTAGGAACGAAGCCAAACGAGAAGAAAACAAGTTGGTTGATTCGTTCGTGGTTGTTATGTATGGAACCCCTGACGATATTACCATTGAGCGAATAACCGACTCGCTCCACTGTGATAATGCTCCACACCTAACCAACAAGCCCAAACTTGTTTATGTAATAGGTGGTGACATACTCGTACAGCAAGTCGTGGATATATCAACACGAAATAAAGATCCAGATATCCTCATTGGTTCAACCGGTTTCAACGGCGTGATGTTCTTCATTTATGTTTTCTGTTCATTTGTGCACGAGCTTTCTGCCAAAGACATGTGGCGGCTTATTTTGCAATTCGCTAATCACCACAGATTCACTGCATCGATACATTGTACATTGACGAAAGAGTTCTTCTTTTTCCCGGGAGTCAGTAAATCAGTGTTGCCAGATGACCTCGCTAACTTAGATCCCCAGGACATGACTCTGTACATGAAGATGCTTGAACACGGATGGGTGGAAACTTACAACATACGCTTGATGTTTGTGGGTCTTTATGGTGCTGGTAAAACATCTACCGCTCGCAGAATTATGGGCAAAGAAATAGAAGATGTTACTAGTACAGACGGGATAGACGTTTATATTGGCAAATGCCGAGTTAATATCAACAGTAACACATGGACTACTGTAGAGAATCCGGAACATAGTATGCCGTACATAAAACTGTCGCACAAGTTAAAAGAACCTGACGGGTCATCATACAGTCATGGTCTAGAGAAGACGGAGCTAGATTCGTTTGCATTTCACAAACGTAGAAGACTTGCATATAGTACCAGATCGTCGTCATCCAGGACCTCTTCGGACCTCGTGGACTTTGAACGGCTGAATTTATCGTCTTCAACAAGTTCCTTCGACAGATGTGATTCAGTTTCTTCTGAATGTGACTGGACGGAAGAACACCCACCAGAGAATAGCAAAATAGAATCGCTAAAGACTGCACAACGAGTTATACAAGACGCTCGAAATTCAAACGAGTCGCTGCCAGATACAGCGGTGGTTTCACTGTGGGACTTTGCTGGTCAGTTTGTGTATTATGCCACCCACCAATTATTCTTCAGTCCACGCTCTATCTACCTACTGGTACTGAATATGGAGGAGGACCTAGACAGGACACTAGATGATTGGTACATGGACCTTAAAGGGAAAGAATCTATTGAAGCTCAGGGTGGAGTTCACTTTTGGCTTAGTTCCATCTACACCTATGCGAAGGGGACAGGTGATGGTGTGCCGCCGATTATTCTTGTTGGCACTCATATGGACAAAATGAAAGGGAACGATGATGAGAAAAGAAAATATGCAAAGAAGTACTTCCAGCAGATCAGAGATAGTTTCCACGAATCTCCTATTGCTGACCATATCAGGATGGAAGACATATTGCTTGATAACAGTGTTGTAGATTCCAATTTAGATCAGCTCAAAAGCATAATAATGAATGTTTCAAAGGATATGTTCTATTGGGGTGAGAAGGTTCCTGCAAAATGGGTTGAACTTGAACAAGCATTAGACGATCGGCGAACGGATGGTACGAACTTCATGAAATTTTCGGATTTGAAGAATATAAACCAGACATTAGCATCGCCTCTAAACAGTGTAGACCATTTAAGGTTATTCCTGAAAATTCACCACGAAATTGGTACGCTGATTTACTTTCACGACTCAGAGGTGCTCCGGGACATCATCATCCTTGAACCGCAATGGATTATACATGCGTTCCGCCATTTGATCAGAGCAAAGGACTTCGGGGAGAAATATGGTCAACTCCAAGAACAGTGGAAAGAGTTCCATGATACAGGAAAATTGAACATCAACCTTGCTGAAAGCATTTGGAAACAAGATCACGGGAACCAGTTTTACGAGAATTTTGACATGCTTCTTCAGGTTTTTGAAAAGCTTGACATCATTGTTAGAGCCTCACAACTTCGAGAAGACGGAACGACACAGGCGCTCCTCGATTTCTACTATGTACCTTGTCTGCTAAAAGAACCACCACCCGACAGAATTCTTCATATGCGGCAAATTCCAGACGGAGTGAGCAGCCCCGTTCTGTGCTTCACTTTTCAGGAGAACTTTCTCCCACCTGCCGTCTTTAATCGAGTTCTGGCGCTCTGTCTTGGGAAATGGCCTGTTGCCAGACAAGGTAAAAACACACTTCTGTTCTGTGGATGTGCCGTATTTGAAGTCAAAGAAAGGAAAGACGAGGATAGGCATAGACTTCACATCTGTTTCAAGAAGTCAAAGATTGGTGTTCGTATTAGCCGTTACAGCACCAAAGATAATAGCGAAGTCGATAGGAATGTGTGTGATCGAGTACGACGATTTATAACCGATGCTGTTAAGAAAGAATTCAAACGCTTTCAGAACAAAGCTATTGCTGACCAGGATCAAGACAACATAGAAAAAGAATCATTTTTCTTCCAACTTCAATGTAAAGAAACCAATGAAACTGACATACTGGATGATGGACTGCACAGATTGAAGGATCTCGTCGATGATATAGATTCCGATGCGTTCTGTACAAAGCATACAAATACATCAGACCCTCATCCATATGATCCCGTGGAACTGTTACAAGAGTGGTTTCCAAACAGCATTCCAGAACAATTCAGGAGAACAAACGAAACAGTGTTTGAGGTGTGGCAGCAGAGATTACCGGACATTAAAATGCAACAGCCTGTTAGTGAAGTAACATTGGCAAAACTGTCAAAAGCTATAGGCAAGAACTGGTGGTCACTGATGCATGACCTAGGTGTGGAGCAAACGGTCATCGAGCAAGAATCGAGTAACTGTTATCGTGATGTAGCTATGCAGATATTCAATGTGATGGGGATGTGGGCGAGAACGTCTGATGCAACGAACACAGCATTGCTAGATGCTTTGAGGAATAGCAAAAATGTCACAATCGACTGGGAACAAATACAGAATATTTTTGATCAGCTATAA

Transcript

Ama17867

TGGCTCGAGTTGTCTTTCTTGGTTCCATGATTGTTTTGCCGATAGGTGCGCATGATTGGGCGAGTATGCCTTTAAATGCTTGCTAATTCTCTGTATATATGTTCGTGTTGTTAATAATGAAGAGTAATGTGTATAACGTGTAAGGGGACATAAACATATTACGGAATCAGTGCTCATGAATCAGACATGGACATGTCTTCACCTGTGCAAGAAATTGACGGAACTCCGATTGATGTTGTTCAACTAGATAAAACATTCGGGGTATGGGTACACACAGGAAGGAAGATCACCATTTCACCAAGCGATAATTCTTATGTTCAAAAGAAGCTTACAGATCCACATGTATATCCCATATCCAAACATATTCGGGGTAAGGTCATTCTCATATCCAACACGGGATACCAAGCACTTCGGCTTCTCAAGGATCTCTTCATGCAGATGAGCTACAAGATCGCAATATTCACGGAAAAGACTAGCGAGGAAATGTATGAAATAGTTAGGAACGAAGCCAAACGAGAAGAAAACAAGTTGGTTGATTCGTTCGTGGTTGTTATGTATGGAACCCCTGACGATATTACCATTGAGCGAATAACCGACTCGCTCCACTGTGATAATGCTCCACACCTAACCAACAAGCCCAAACTTGTTTATGTAATAGGTGGTGACATACTCGTACAGCAAGTCGTGGATATATCAACACGAAATAAAGATCCAGATATCCTCATTGGTTCAACCGGTTTCAACGGCGTGATGTTCTTCATTTATGTTTTCTGTTCATTTGTGCACGAGCTTTCTGCCAAAGACATGTGGCGGCTTATTTTGCAATTCGCTAATCACCACAGATTCACTGCATCGATACATTGTACATTGACGAAAGAGTTCTTCTTTTTCCCGGGAGTCAGTAAATCAGTGTTGCCAGATGACCTCGCTAACTTAGATCCCCAGGACATGACTCTGTACATGAAGATGCTTGAACACGGATGGGTGGAAACTTACAACATACGCTTGATGTTTGTGGGTCTTTATGGTGCTGGTAAAACATCTACCGCTCGCAGAATTATGGGCAAAGAAATAGAAGATGTTACTAGTACAGACGGGATAGACGTTTATATTGGCAAATGCCGAGTTAATATCAACAGTAACACATGGACTACTGTAGAGAATCCGGAACATAGTATGCCGTACATAAAACTGTCGCACAAGTTAAAAGAACCTGACGGGTCATCATACAGTCATGGTCTAGAGAAGACGGAGCTAGATTCGTTTGCATTTCACAAACGTAGAAGACTTGCATATAGTACCAGATCGTCGTCATCCAGGACCTCTTCGGACCTCGTGGACTTTGAACGGCTGAATTTATCGTCTTCAACAAGTTCCTTCGACAGATGTGATTCAGTTTCTTCTGAATGTGACTGGACGGAAGAACACCCACCAGAGAATAGCAAAATAGAATCGCTAAAGACTGCACAACGAGTTATACAAGACGCTCGAAATTCAAACGAGTCGCTGCCAGATACAGCGGTGGTTTCACTGTGGGACTTTGCTGGTCAGTTTGTGTATTATGCCACCCACCAATTATTCTTCAGTCCACGCTCTATCTACCTACTGGTACTGAATATGGAGGAGGACCTAGACAGGACACTAGATGATTGGTACATGGACCTTAAAGGGAAAGAATCTATTGAAGCTCAGGGTGGAGTTCACTTTTGGCTTAGTTCCATCTACACCTATGCGAAGGGGACAGGTGATGGTGTGCCGCCGATTATTCTTGTTGGCACTCATATGGACAAAATGAAAGGGAACGATGATGAGAAAAGAAAATATGCAAAGAAGTACTTCCAGCAGATCAGAGATAGTTTCCACGAATCTCCTATTGCTGACCATATCAGGATGGAAGACATATTGCTTGATAACAGTGTTGTAGATTCCAATTTAGATCAGCTCAAAAGCATAATAATGAATGTTTCAAAGGATATGTTCTATTGGGGTGAGAAGGTTCCTGCAAAATGGGTTGAACTTGAACAAGCATTAGACGATCGGCGAACGGATGGTACGAACTTCATGAAATTTTCGGATTTGAAGAATATAAACCAGACATTAGCATCGCCTCTAAACAGTGTAGACCATTTAAGGTTATTCCTGAAAATTCACCACGAAATTGGTACGCTGATTTACTTTCACGACTCAGAGGTGCTCCGGGACATCATCATCCTTGAACCGCAATGGATTATACATGCGTTCCGCCATTTGATCAGAGCAAAGGACTTCGGGGAGAAATATGGTCAACTCCAAGAACAGTGGAAAGAGTTCCATGATACAGGAAAATTGAACATCAACCTTGCTGAAAGCATTTGGAAACAAGATCACGGGAACCAGTTTTACGAGAATTTTGACATGCTTCTTCAGGTTTTTGAAAAGCTTGACATCATTGTTAGAGCCTCACAACTTCGAGAAGACGGAACGACACAGGCGCTCCTCGATTTCTACTATGTACCTTGTCTGCTAAAAGAACCACCACCCGACAGAATTCTTCATATGCGGCAAATTCCAGACGGAGTGAGCAGCCCCGTTCTGTGCTTCACTTTTCAGGAGAACTTTCTCCCACCTGCCGTCTTTAATCGAGTTCTGGCGCTCTGTCTTGGGAAATGGCCTGTTGCCAGACAAGGTAAAAACACACTTCTGTTCTGTGGATGTGCCGTATTTGAAGTCAAAGAAAGGAAAGACGAGGATAGGCATAGACTTCACATCTGTTTCAAGAAGTCAAAGATTGGTGTTCGTATTAGCCGTTACAGCACCAAAGATAATAGCGAAGTCGATAGGAATGTGTGTGATCGAGTACGACGATTTATAACCGATGCTGTTAAGAAAGAATTCAAACGCTTTCAGAACAAAGCTATTGCTGACCAGGATCAAGACAACATAGAAAAAGAATCATTTTTCTTCCAACTTCAATGTAAAGAAACCAATGAAACTGACATACTGGATGATGGACTGCACAGATTGAAGGATCTCGTCGATGATATAGATTCCGATGCGTTCTGTACAAAGCATACAAATACATCAGACCCTCATCCATATGATCCCGTGGAACTGTTACAAGAGTGGTTTCCAAACAGCATTCCAGAACAATTCAGGAGAACAAACGAAACAGTGTTTGAGGTGTGGCAGCAGAGATTACCGGACATTAAAATGCAACAGCCTGTTAGTGAAGTAACATTGGCAAAACTGTCAAAAGCTATAGGCAAGAACTGGTGGTCACTGATGCATGACCTAGGTGTGGAGCAAACGGTCATCGAGCAAGAATCGAGTAACTGTTATCGTGATGTAGCTATGCAGATATTCAATGTGATGGGGATGTGGGCGAGAACGTCTGATGCAACGAACACAGCATTGCTAGATGCTTTGAGGAATAGCAAAAATGTCACAATCGACTGGGAACAAATACAGAATATTTTTGATCAGCTATAAATACTTAATATCTTCATCGCACGTTTCATTCTTTCACATTGTGCATAGAGATTATTCTATTGAAAGTATAGGCAAGCATCTTGCCTAGATGTATAAGTGTTGGTTCGTCATTGGAGGTAAATATTTGCTTGTATTTAATGACATTTCGAAATTGGCAGTTTCTTACGGAGGTTGGTGCACCAAGTACTGGTTAATCGCTGGAGCCTGCCCAGGAAATGTGGTGTTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR001309	Domain	Peptidase C14, p20 domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR015917	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029030	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR039788	Family	Nucleolar protein 4 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12449	DEATH DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-