Gene detail

Detailed information of Ama00892 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama00892	H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1	chr5	32415317	32426228	-

Gene Structure

More details in Jbrowse Sequence

CDS

Ama00892

ATGGAGGTAGAAGACACTGAGCAAGGCATGGTATTGGATGCAGATATCTCAACAGATAAGACAGCGAACAGTGGATGTGTATTAGATTCAACTGACATCAATAAGGTACTGGATGACACAAGAAGAGGTCAACTGGAGACTAGTACATCAACACCTGTTGGTGACATTAGAAATGTGTCTGCTAAGAACATTGATGATACAAATGCACCAGTTAGCATTATACATGGTGATGTTGTTCAAGTAGAACCAATGGAGAGCACAGAATCGCAGACCACAGATGAGAAGGATAATGATTTAGAAGTTACTGTTATACCACAAGAAATAATAGATGATGTAGATACTTGCGATGTTGAAGAAATTGCTAGCAGTACACATACAGTTACAGACGGTTCAAATGGACTTGAAATACACTCTACAAGCAAAGCAACCGTGGAAAATAATACCAATAGTTCAGTCGAAGAAAATATTTTGCCCAAAGGTACAGATAGATTGGATTCAGAAAGACCCGTGTCTGAAGATGATGTAGTTATTGTTGATCAAACAACTGAAAAGGGTTCAGAAAAATCATTAGAACATGTTGATCAAATAACAGAAGTGATTATCATCGAAGAATCAGTAGGGCTGTCTAAAGATAAAGATGTTGAAGAGAGGAATGAAATTGCATTGCGTGATTCTGATGTAGTGATTGTAGGAGATCCGAGTAACCTGATGGAGTACAGGAGCACAGAGAGAGTGATCACCATAAATGACTCGGAAGATACCTCAGGGGACAGTAGTGGCTCGGAGGTTGAGCTGCCTGATACTGACCATGCCAGAACTGAGAATACAGATGCACAGATTAATATGATAATTTCCAAAGAGAGAGAGGCATCACCAGATCGTGAAAGGAGGATAAAGATGAACAGACATGGTTTTGAGGATGTTAGAACTAAAGGAGAGTTACAGCCAGAGGATTTGCCTCCCCTTGAAGAGTTGACAATCACAGTGGATGAGTCTGTTGTTATGATGGAAGTTGGCAAAATCAAAAGTATTGTCGGAATTTTAGTTGTAATCCAGTCCAATGAGAATATTCCAGCACTGAATGACGAGACCATTCTGTTTGTAGAGGGACACAAAGTTCTAGGACAGGTTTTTGAGGTGTTTGGTCCAGTGATGACACCGTGGTATTCTGTGAGATTCAACGAGGCAGACAATATAGCAGCTAAGATGCTTGAAGTAGGCATGGCAGTGTACTGTGCCCCGAAGGAAGACTCGTTCACAAAGTTTGTCTTCGTTGATAGCCTGAAACGGTTTAAAGGATCTGATGCATCATGGGAAGACAACAACGAACCACCAGACAAGCATCTGGATTACTCGGATGACGAGGCAGAGAGACGTGCCAAGGCTAAGCGGCGCAACAAGAAGACCGGAGAACATGAAACCGAGGATGATGCGGATAGTTTAGTGCAGAGAAAAAACCGCAGGAACCGCAATAGAAATAGAGCCCAACCAGATGAACAGAATGGCACTGGACCACCGCAGAACCATCCTAGAAGAGGCTGGAACCCATTTCAGGGCAACCAGAATAACGACTGTAATGCTCCACCAAGATTTGGAGTTAGACCTCAGAATAACATGAACAGCAATCAATCGGGTGGGCAGTGTTGGCCGCCACGTCAAGATAGTTCTTTCAACCGACCACCGTCACATTTTGGTGGACCTCCGAACTTTCAGAATCGACCAAGAATGGGACAACAACAACAGAGCAGCTGGAGGCCACGATACTCTAATAATCATGATAATGGTAACGGTGGAGTTCCAAGGATGCCCTTCACGAATGGTCCACAAAGTACACGATTTGGACCGGGCCCCAGACAGAATGGTCCACCACCAGGGCCAATGAATACCAATTTCTCTCGACCACCTCCAATGCTCCAGAGTGAATTTAGGCCAACGAATCGGTTTACTGGGCCAAATCAGTGGAGAATGCCACCAGTCAGTGGGAATCAACAAGGTAGCAGGTTTATTAATGCTTCTCAAACAAATGCAAATAATCCGCCAACAAATACCGGGAACCATAGTCTTAATATAGACAACAACATGCCCGAAAATCAAGGGAACCAAATGTTTAATCAGTGGCAAGGAAACCAAATGTTAAACCAAGGACAAATTAAACCGATGTTAAACCAAGGACAGGGGAATCCAATGTTAAACCAAGGACAGGGGAATCCAATGTTAGACCAAGGACAGGGGAAACAAATGCTAAACCAAGACCAGGGTAATCCAATGTTAAACCAAGGACAGGGGAATCAAATGCTAAACCAAGGTCAGGGGAATCCAATGTTAAGCCAGGAAAGTGGAGTTGGTAATCAGAGATTCGAGTTTATGAATGCTAAAGCAGGTGGTAATGAGGAGAGTTATGGTTTTCAGCCTGGTCAGAGCAACGTAGCATCCAATTCCCAGCAGCCACCGAACAACAGAAACCAGGGGCAGAACTCAGCTGCAAAGAAGTTCCAATACCATAGTTTAAATCCCACAAAATCTTCGGTGCCCCATGAAGCTGGACCAACTGGGAACCACGGAGGATATAATCATACCACTTTCAACAACACTTCCCAAGACAACTACCGATCGGGTCAAACCAATGTTTCTGTACCAAATGGAAATGTAGCAGAGCAGCAAACTACATATACTGCTTCTCGTTTCGTGCCTGACTACCATAGTAACCCAGCACCCGGACAAATGGGCTACAATACACAGCAATCAAACTTTACTGGTCCTGTACACGGTATCGGAACTTCACATCATTCAGCTAATACAAATATTGCAAATAATGGTGTTAATAACGGACCTAGCGATGTAAGTGGAAAGTTTGTTCAAAACCAAAATTACAGTAATACTTTAAATCGCACACAACACTTTCAGCAGCAGGGAAGTGGAAGTGACGGTATTGGTGGTCAGTATGGTCCACAAGGATTTCACAACAATAGTGTGTCAATGGAGCAACAGCATCAAGGTACTGGACATATTGGTGTGAACATAGCTGGGAACAGTTCTGTTGGATATAATCAAGTGGGCAACACGAAAAAACATGTGATGGACCATAGGTACATTCAGAATGACTCTTGA

Transcript

Ama00892

CGAATTCAAATCAAACACAGCACATGTAGTGTAACACGTGCGGCAGTGTACATTTTAGATATAGTTCGATCAATTTTGATACTCCTGAAGTAGATAGGCGATGGAGGTAGAAGACACTGAGCAAGGCATGGTATTGGATGCAGATATCTCAACAGATAAGACAGCGAACAGTGGATGTGTATTAGATTCAACTGACATCAATAAGGTACTGGATGACACAAGAAGAGGTCAACTGGAGACTAGTACATCAACACCTGTTGGTGACATTAGAAATGTGTCTGCTAAGAACATTGATGATACAAATGCACCAGTTAGCATTATACATGGTGATGTTGTTCAAGTAGAACCAATGGAGAGCACAGAATCGCAGACCACAGATGAGAAGGATAATGATTTAGAAGTTACTGTTATACCACAAGAAATAATAGATGATGTAGATACTTGCGATGTTGAAGAAATTGCTAGCAGTACACATACAGTTACAGACGGTTCAAATGGACTTGAAATACACTCTACAAGCAAAGCAACCGTGGAAAATAATACCAATAGTTCAGTCGAAGAAAATATTTTGCCCAAAGGTACAGATAGATTGGATTCAGAAAGACCCGTGTCTGAAGATGATGTAGTTATTGTTGATCAAACAACTGAAAAGGGTTCAGAAAAATCATTAGAACATGTTGATCAAATAACAGAAGTGATTATCATCGAAGAATCAGTAGGGCTGTCTAAAGATAAAGATGTTGAAGAGAGGAATGAAATTGCATTGCGTGATTCTGATGTAGTGATTGTAGGAGATCCGAGTAACCTGATGGAGTACAGGAGCACAGAGAGAGTGATCACCATAAATGACTCGGAAGATACCTCAGGGGACAGTAGTGGCTCGGAGGTTGAGCTGCCTGATACTGACCATGCCAGAACTGAGAATACAGATGCACAGATTAATATGATAATTTCCAAAGAGAGAGAGGCATCACCAGATCGTGAAAGGAGGATAAAGATGAACAGACATGGTTTTGAGGATGTTAGAACTAAAGGAGAGTTACAGCCAGAGGATTTGCCTCCCCTTGAAGAGTTGACAATCACAGTGGATGAGTCTGTTGTTATGATGGAAGTTGGCAAAATCAAAAGTATTGTCGGAATTTTAGTTGTAATCCAGTCCAATGAGAATATTCCAGCACTGAATGACGAGACCATTCTGTTTGTAGAGGGACACAAAGTTCTAGGACAGGTTTTTGAGGTGTTTGGTCCAGTGATGACACCGTGGTATTCTGTGAGATTCAACGAGGCAGACAATATAGCAGCTAAGATGCTTGAAGTAGGCATGGCAGTGTACTGTGCCCCGAAGGAAGACTCGTTCACAAAGTTTGTCTTCGTTGATAGCCTGAAACGGTTTAAAGGATCTGATGCATCATGGGAAGACAACAACGAACCACCAGACAAGCATCTGGATTACTCGGATGACGAGGCAGAGAGACGTGCCAAGGCTAAGCGGCGCAACAAGAAGACCGGAGAACATGAAACCGAGGATGATGCGGATAGTTTAGTGCAGAGAAAAAACCGCAGGAACCGCAATAGAAATAGAGCCCAACCAGATGAACAGAATGGCACTGGACCACCGCAGAACCATCCTAGAAGAGGCTGGAACCCATTTCAGGGCAACCAGAATAACGACTGTAATGCTCCACCAAGATTTGGAGTTAGACCTCAGAATAACATGAACAGCAATCAATCGGGTGGGCAGTGTTGGCCGCCACGTCAAGATAGTTCTTTCAACCGACCACCGTCACATTTTGGTGGACCTCCGAACTTTCAGAATCGACCAAGAATGGGACAACAACAACAGAGCAGCTGGAGGCCACGATACTCTAATAATCATGATAATGGTAACGGTGGAGTTCCAAGGATGCCCTTCACGAATGGTCCACAAAGTACACGATTTGGACCGGGCCCCAGACAGAATGGTCCACCACCAGGGCCAATGAATACCAATTTCTCTCGACCACCTCCAATGCTCCAGAGTGAATTTAGGCCAACGAATCGGTTTACTGGGCCAAATCAGTGGAGAATGCCACCAGTCAGTGGGAATCAACAAGGTAGCAGGTTTATTAATGCTTCTCAAACAAATGCAAATAATCCGCCAACAAATACCGGGAACCATAGTCTTAATATAGACAACAACATGCCCGAAAATCAAGGGAACCAAATGTTTAATCAGTGGCAAGGAAACCAAATGTTAAACCAAGGACAAATTAAACCGATGTTAAACCAAGGACAGGGGAATCCAATGTTAAACCAAGGACAGGGGAATCCAATGTTAGACCAAGGACAGGGGAAACAAATGCTAAACCAAGACCAGGGTAATCCAATGTTAAACCAAGGACAGGGGAATCAAATGCTAAACCAAGGTCAGGGGAATCCAATGTTAAGCCAGGAAAGTGGAGTTGGTAATCAGAGATTCGAGTTTATGAATGCTAAAGCAGGTGGTAATGAGGAGAGTTATGGTTTTCAGCCTGGTCAGAGCAACGTAGCATCCAATTCCCAGCAGCCACCGAACAACAGAAACCAGGGGCAGAACTCAGCTGCAAAGAAGTTCCAATACCATAGTTTAAATCCCACAAAATCTTCGGTGCCCCATGAAGCTGGACCAACTGGGAACCACGGAGGATATAATCATACCACTTTCAACAACACTTCCCAAGACAACTACCGATCGGGTCAAACCAATGTTTCTGTACCAAATGGAAATGTAGCAGAGCAGCAAACTACATATACTGCTTCTCGTTTCGTGCCTGACTACCATAGTAACCCAGCACCCGGACAAATGGGCTACAATACACAGCAATCAAACTTTACTGGTCCTGTACACGGTATCGGAACTTCACATCATTCAGCTAATACAAATATTGCAAATAATGGTGTTAATAACGGACCTAGCGATGTAAGTGGAAAGTTTGTTCAAAACCAAAATTACAGTAATACTTTAAATCGCACACAACACTTTCAGCAGCAGGGAAGTGGAAGTGACGGTATTGGTGGTCAGTATGGTCCACAAGGATTTCACAACAATAGTGTGTCAATGGAGCAACAGCATCAAGGTACTGGACATATTGGTGTGAACATAGCTGGGAACAGTTCTGTTGGATATAATCAAGTGGGCAACACGAAAAAACATGTGATGGACCATAGGTACATTCAGAATGACTCTTGAGAACTACTGAGTGTATTCATGTACATGGCTGTGATGAGATATGTCATGCAAGTTTGATGTGGCCGGTCTACCAATATCAAATATGTTGCTTTTACATTCACTATCTGTGTAATATTCATGTAGAAATCGTGTTTCTATTAAAAGTATAACACTATTCATAGGGCTAATTGTCCGTGTAATACCAAGGGGACTATGTGGCCGAGTGGTTGAAAGTTGTAGACTTGTCACTTGCCCCCTCACCACTGTAGGTTTGAATCCCACTGGGGGTGTTGGTATGATACCTTATGGTGGAAGTTCGAGCCCCACTGGAGCCATTGCGCCCTTAGGCAAGGCATTCAAATTCCACATTTCCTCTTCTCTCTCCCTCGTGGCGATGGATTCCATCAGGAATGAGGTCTCGAGAGTGATTTATATAAGTTGAAATAACTTGTTTCGCAATCGAGCTAAAATAAATTTGTATAAACTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04410	Gar1	Gar1/Naf1 RNA binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007504	Family	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR011049	Homologous_superfamily	Serralysin-like metalloprotease, C-terminal	Interproscan
IPR038664	Homologous_superfamily	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	Interproscan
IPR040309	Family	H/ACA ribonucleoprotein complex non-core subunit Naf1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31633	H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000493	Biological Process	box H/ACA snoRNP assembly	Interproscan
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005732	Cellular Component	sno(s)RNA-containing ribonucleoprotein complex	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-