Gene detail

Detailed information of Actinostola_20035 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_20035	TRANSLATION ELONGATION FACTOR-RELATED	scaffold87_size672142	556427	567741	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_20035

AAGACGACTTTAGCAGATGCTCTTGTAGCAAGTAATGGCATCATATCATCACGGCTCGCTGGCAAGCTTAGGTATATGGATAGTCGTGAAGACGAGCAAATTAGAGGGATAACAATGAAGGCTAGTGCAATATCTCTACACTATGCTAAAGACAATAAAGAATTTCTCATCAATCTCATTGACTCCCCTGGCCATGTGGATTTCTCCAGTGAGGTATCCACAGCAGTACGACTGTGTGACGGTGCAATAGTTGTGGTAGATGCAGTAGAGGGAGTATCTCCTCAGACACAAGTTGTGTTAAGACAAGCTTGGCTGGAAAACATCCGTCCATGTTTAGTGGTGAATAAAATAGACCGGCTGATAACAGAGCTGAAGTACTCTCCGTTAGAGGCGCATCTTCATTTACAGCAAATCCTTGAACAGGTAAATGCTATCACTGGTAAACTTTTCAGCTCTGAAGTAATGGAGAAGTCGTCAAGCAAAGTAGACAATTCAGCTGTTAAAAGGGACAACTTGATTAATGACGACACTGCAGTCTCTATAGAACATTGGAGCTCGGGATTGGATGAAGTCGATGACTCCACACTGTACTTCTCTCCTGATCTTGGCAATGTTGTCTTTGCGAGTGCAATAGATGGCTGGGGCTTTAGTATCAATGATTTCGCTGTCATTTATGCCAAAAAGCTTGGCCTTAATGCTGACATCTTACGCAAGACACTCTGGGGAGACTTTTACCTTGATCCCAAATCCAAGCGAATATTTAAGAAGGCTCACAGTAAAGGAAAAAAGCCACTGTTTGTGCAGTTTATTCTACAGAATATTTGGTCTATTTACGATGCTGTTGTTGTCAGAAGGGACAAGCTAAAGACAGACCAGATTGTTAAGTCTCTGAATTTGAAGATCTCAGCTCGAGACAGCCGCAGTACAGACTCACGAGTACAACTCCATGCCATTCTTGGCCAGTGGCTGCCTTTGTCTTCAGTTGTGTTGAGCATGGTTGTTGATAAACTACCAAGCCCACTTGAGATGGAAGGAGAAAGGGTTGAAAAACTGTTGTGTAGTGGACTCAGAACGTTTGAATCATTGCCTCAAGACACCAAGAACCTTAAACAAGCTTTCTTGTCTTGTACATCGACTGAAGAAGCTCCTTTGATTGTCTTTGTGTCCAAGATGTTCGCAGTTGACGACAACTCATTACCTAAACATAAAAAACGGCCGTTAACACAAGAGGAAATCACTGAGCGTCGAGAACGAGCTCGTGAAAAGCATGCACAAATGCTGCTGAACTCCACACGGAAGGCTGAGACTAATGAAGATGAAACGTGCAGCGTATCGACTACGGATTTGGTGCCAGAGAAAAAGAACGAAGAGTCGTCCACACCAGCGACACATTTCATGGCCTTTGCAAGGGTATACAGTGGAACGATAAGAAAAGGACAAAGGTTGTATGTGCTTGGACCCAGACATGACCCAAGAAATATCTCAGATGAAGAGAAAAATGCACGTTGTAGTGACTACGATAGTTCAGAGATAATGAATACAGATTCCAAAGCGGAAGGACTGGCCGTCGCTAAATCCGTAGATCTAGGAAACAATCAAACTATTGCTGTATTCACCGTAGATGATCTCTACTTATTGATGGGCCGTGAGCTTGAAGCCCTTGATTCCGTTCCAGCGGGTGAGCACGTGATCGTTGCTGCTGGCGAAGTTCATCTACAAAAGTGTGTCGACGATCTCAAAGAACGTTTTGCTTGTGTACCTTTCTGTGTTTCTGAACCCATCATTCCGTTCCGTGAGACTCTGATACGTCCACCTAAAATGGACATGGTTAACGAGGCTATTGCAGGAAACGTGGTTGCTCACCCATCAAAACCAGATACAAACTATGATGGCGCCAAAACTCCTGGAAATAAAGACAAGACTCTGGTGGAGATTGTCACGGCCAACAAGCGGTGTTCGATCCACATACGAGCCATTCCACTAACAGAGCAAATCACCCAGCTCCTTGACACCAACACTGAAACCATCAAACTATTAGTTGGTACTGAAAAGAAGCAACTGGGATCTCAGATCAATAGTCAATCTAAAGATGATATCAAAGGATTATATTGTAAGCTGAAAGAGTTATTTGACGAGGCAGGGGCCGAGTGGAAGGACGCCGTGGACAATATATGGGCATTTGGACCGGCACGAACGGGGCCTAATTTACTACTTAATAGAATACCCGATTATAATCGTCCTTCAGTGTGGCTGGTATCTGACAGAGGTAAGAGCGGAGCGTTGAGCTTACTTTAA

Transcript

Actinostola_20035

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42908	TRANSLATION ELONGATION FACTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0042256	Biological Process	cytosolic ribosome assembly	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-