Gene detail

Detailed information of Actinostola_20023 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_20023	UNCHARACTERIZED	scaffold87_size672142	193044	229872	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_20023

ATGATGACCAACAGAACTTCACAGAGTGATCATTTACAAGCAGTATTCTTGATCGATGAAAATACGACCATAATTTCTAAAGGGAATTCACGTGAACAAGCGTCAAAATGTGTTTCTTTGTGTGTTTTGAGGATCCTTTCGTACTTCAAAGAGCTTCGCTGTCCACGATTCTCAAGTCTACACTGGGGTTTTAAGTTTTACAGCTCAACTTCTTTGACCCATCGATGTGAAAGACATAACTTCAAGGACTTCTGTGTTTCTGAGTTCGAGAATTTTGAGAAAATTCTCAACTCTCGCTTCAAAGAAGCACAACAACAGAACAGTCTTTGTGCGACGTCTTCAAATACAACGTCTGCTAAATGTCTGACTTGTGCACTCACGGATGTCATTCACGATTTCCAGTGGGATACGAGCGATATTAATTCACCTTTGCGTACGACTCGTCGGTCAAATCCAGCTCATTCTCGCAAGAGACATAATGTTGTGTTTTTGTTGACGTCTTGTCCGAAAAGTTACCAAAGTTTGGAGGAGTTTGTGGGAAGGAGTGTCGAACCTTCTGAGGAAATTAAAAGTGCAGTCATGTCGCAGGCTTTGGTTAGGGAGTTTGTTGATATTTATGGTATCAACCTGTATTGGATTGACACTGACTACAATAACAAGGCAATGGACAGTAGGATTATCAACATGATCAATACATTCCTTCGAATACTTCAAGGTACAATCATCCCATTACAAGCACTAGTGCACATGGAATGGCATCTCATATCAGAACAACAACCCCAGGACGATGTTAACCTGTGTGGTCCAGTAATCCCAGTGATGTCTGTATTAAATCACTACATGAAAATAATAGAAACAGAAAGCACAGATACTCTTGCCTATAAACCCGCTATGAATGCCGTAGATCTTCCAGGAAGTGATGACAAAATCTGGGGTAAAAGTAGATTTGTTGGCTGGCTATGTTCTCCAGTTGAGAAACTTCAGTCGGAGTTAGGGACAATGAAAGAGAGCCAAGACGGCGAACAGTTCACCAAGCAATATGTTGTTTACAAGCAAGAGAGAAAACTTAAGAAGTTCAGCGGAAAAGCTGTGAATGGTGATGTGAATTATTACCAAAAAGTTGAAGAATTTCTCTCAGAAATTAATGCCATCTTCGAAGCACGAAGAATGACGACTGCTGAAAAAATAGAATTCATTTCGACACACCTCGAAGGGCCGGCTCGTGAGGAAATCAAATTATACCCAAAAAGTGATCAAAACGACCCAACGAAGTTGCTCGAAATACTGAGGAAAGAATTTGGAGAAAAACAATCCCTCCCAGAGCTGTTCAAGATGTTTTATAACCGTAAACAAAAAGATCAAGAAAGTCTGAGAGAATACTCACATGCTTTGTCGAGTTTGTATACGAGGATCACACAGAAATTTCCAGGCGATTCCGACAATCCCACAGATGTCACAGTTCGTGACCAGTTCGTTGACAATGTCAAGGATTCCATTCTCAGAAAAGAGTTGAAGAAACTGGTGAGGAATAATTCTGATGTGTCTTTCCTTGAAGTCCGTGAGGAAGCTCTAAGATGGTCCGAAGAGGACGTTGTGTCAGTAAACCGTCGTTGTAATGTACAAGAGATTGCTAGTGCCAGGACCCGCTCTGACAATGACGTAGCGTGCGAAGCTGTTTCCGTTTCCGGTCCCAGTTCAAGTGAACTTCAAGATATCAAAGGAACACTGTCCCGTCAGCAAAAGATGATTGAAGATATTATGCAAACCATGAAGACACTTGATGGTAGAAATAAGGCGTTCAAAGAGTGGAAGTGTTACTTCTGTAAAGAACAAGGACACATCGCCAAGAATTGCCCGGTAAAGAAGAATCGTAACCCAAACCTACCGCAACCGGAACAACGAAGCCAGCCAAGTGATCCAGTGATTCCATTGGATTTTTTGCTGGGGAGGAGAGAGGAAGAAAGTGCCACACATAGTGCTGATGATTGGCTACAGACACATAGAGAACGCCTGCTGACAGCATATGAAAAAGCAGCCAAGCAGCTTCAGAAGTGTAGCGAGGAACGCACAAGACACCTTGATAAAAAGATCCACGACCCCCAAATCAACGTTGGAGACCATGTTTATATGAGGAATAGAATTACAGGAAGAAACAAGATACAGGATGCCTGGAATCCCAAACTGTACGTGGTTGTGTATGTACCAGAGGACGGAAGCCCTGTATACACTCTGAAATCCGTGGATGATAGTACATCTTGTCGGGCTCATCGCAGCTCGTTCAGATTGTGTCGTCCTATGTTTGGAGCTACATCTAGTTCATCGGAAGAGCCAGTATCTGAAGAACGACGTGACCCTGTGATCGATTCAGACAAGCAGGAGGAAGAAGAGGAAGGTGTAGTCTACTACCTTATGGAGCAGCTGCCTAGAGCACCTAGTAATCTGCCGAGAGTCATTGAGATGAAAGACCCTTTATGCAACATACCAGTGACGTCAGTCTTACAGCCTCTTACTTCAGTCTGTGGCATCATCAATGTCATCAACACTGATAGACTTGTAGCAATAGAGAAACTACTACTTTGGAAGCAAGAACAACGAATCGTAGGCTTTCAAAAGGAAGCAGAGATTCTATTCGGGATAGATTTGGACATGCCTGTCCTGGATGAGAAGAGTTCACAAAATCCCTCACAATGTGAAATCCATTCTTCTATACCAACAGTACAGTCCTCAGGTAATTACATTGATGCCGAAGAACAATCTAGCAACAACGAGAGCTCCTTGATCAGACAACTCAAGGAACTTTACAGCAGAAAGAAATCCAAGCAGTCTCACTCGAGAGCCAAGACACCACAACAACCTAGGAAAGAAATGACAGGAACTAGTAAGAGAAAGCAGTGTAAACCTACAAGAAGATTGGAAAAGGTTGATTCCATAACATATTCTAAGAATTCACAAGGGCAGGTGTCCTCAACTGATAAGCCAGAACAAGACCAACTTCAATTATTACTGGACACATTGGAATTAAATGATGAGGCAGACTTGATAACCTTCTTAAAAGATGCCTACTGCCAAAGTGTATCACGTGTTGATGGCTTGACTGACTTCATTGATAAAGCAATAGCAGTAGTTGATTGGTACAAAAACAAGCATAAACAAGAGACCAGTAAGGATTTATTGGCAAGATTACTATCAGACCATCTCATGCTTGATAATTTAACTATAAGGGAAAAGTACGAGGGCAAGTCAGGTGCAAAAGAAAACAAGTTAACAGAGTATCAGATTCAAGTGTTACTCAGACTTGAGGTAGCTTCTTCCATGGCTGACCCACATACTAACTCTGCTGTTATTGATGAGGTTGTTGTTATGTTGAGGTCCATTTCGTTCATTAAAGACCCAGGATTCTTGAGAGATTTTCTTCGTGAGATGATACTTTCAAGATACGCTAATCGAATCCCAAAATTCCTATGTGAGATCTACGAGGGGTTAATGCAGGATCTACCAGCTGAACTTCTCTCCCCTTCAAAACAAGACGACGACGAGTCCCCTCTGAAACGATGTCATATTTTGTCTGTAGTGAGACCAGAATCCGACCAGCCAAGGTACATTAGGAGTGAGGGTACCCGTCCCCTGACAAGACATCGTAGTATTGCAGACATTGGAGGTAGAAGACGAGAGATAGTCGTACCTGGAAAAGCAAAAGTAAAAGTGAAGAAAAAACACGCACAGAAAACGTTTCCATCTTCAACACAAGACAAGAGAAGGAGAGCAAGTGCAGTGACAGAGGAATTGAATATCGTCAAAGAATCCCCTTTGAAAGAAATCCTTGAAGGAGAACGGAGGGCGGTTTGTCTGAATCGGCAAAAAGATCTCTTCGACCTCTTCCACTCGGGTCCAACCAAGCCCCCAGAAGAGCTTATTGCAGACACCAACCAGGTCTTCTCCGAGATCAAGGAGAACGGAGGGCGAAAAGAAGAGCTTAAGGAGTGTGATAACTCTGATAAAGTGGAGAAATTCTGTGCGGATTTCTCTAATCTGGACGAAGAAAAAAATGAGGGTGAATCTTTCATAGAGAAGCCTCTGCAGAATAAATGTCAACAGCCACAAAACGTCGAAGACAAAGATAATAATCCGATTGAATTCTGCGCCAGAGAAGACCTCGGTAGTGACTCCCAAGAAATTACAGTCAACGTCGAAGCCAACACCAAGCGTGACCGACTATCGCTTTCTAAGCGCAAGAAACGGCATCAACCAAAGATTGACGGCCAAGCAGAAGAAGGAAAACCAAGTGAAATACACGATATTCAAGATGAACATGATGAAGAAAAACAAGAGCAACCATCTTGTTACCTTGAAGACAAACCACACGGAGATGGAAATTCTCGTCGAGTGCTGCGTTCTGATAAAAGCACTCTAACATCTCGGAGCCTGGATAGTATCATGGATGATATTCCAGACAGTACGCTAACGTCGAAGGCTAGAAGCAGTAAGGCGTTCCGCTCCAATTCTGATTACACTGGAAATAAGGAGCCAAGCTCGACAAGTCGAAAACGGCTTTCTTTTAGTCCTGCGAAAATACCAACTAGAAGACGTCCCTCGAGAGGAAGTCCTAGTGAGGAACTCAACCTTGTACCTGATGGGCATAACATGGAACAGAAGAGTAACCTAGCCACCAATTTCATCGATGATGTCGATAACAGGAAACAGTCATCACAAGATGGAGCATCTTCCTTGGAGAATCCTTCTGAAGACACCTCGGGTTCTGAACCCTCCAAGAACACTGTCTCACCTCTGAAGCTTAAACCACCCACAAGACAACGTGGTTGCCATGTAGTTGGCGCGCAGAGATTGCTGACCTCGAAACCAGTCGTTGCTACTCCACCAAGGAAGCGAAGGAAGACCCGTACTCAATCTCAACATGAGACTAAGCGATCAAGTCCTTTGAATCAAATCCTCAAGCAACTCCCTTGTGTCCTTAATGTCCCTCGTATCCTTAATGTCCCTCGTATCCTTAATGTCCCTCGTATCCTTAATGTCCCTCGTGTCCTTAATGTCAGTCATGTTCTTGTCCTTGTGTCCTAA

Transcript

Actinostola_20023

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF14893	PNMA	PNMA	Family	Interproscan
PF15292	Treslin_N	Treslin N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR026153	Family	Treslin	Interproscan
IPR032746	Domain	Treslin, N-terminal	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR048270	Domain	Paraneoplastic antigen Ma-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21556	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0007095	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0010212	Biological Process	response to ionizing radiation	Interproscan
GO:0030174	Biological Process	regulation of DNA-templated DNA replication initiation	Interproscan
GO:0033314	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-