Gene detail

Detailed information of Actinostola_18773 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_18773	SORTING NEXIN	scaffold718_size230790	102452	115554	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_18773

ATGCTTGCGTCGCCAGAATGGAAAGCAGGGAAACGAAAGGCAGAGAACGATAAATTCATGGGTGCAGCTTTCTTCAAAACGGTCGATAATCCTCCTACTAAACTGTCTATCTATGCTGTCGAAAACTATGTGGAAAACTTTGGTCGATTCGTCAAGTCGATGGACGATAGTGTCAAGACAATCATAGACAGATCTAATACACACTGTGAGAAATGCATAGGATCTTACAAAAACGAATACAAAAAAATCGGTTCGACGTTCACGGGTCTTAGTCAAGCCTTTTCAATAGAAGACAACACATCAAGTAAGTCAATATTTGGGTTCCCTGTGGTTTGCTATGTTAGTAGTCACCAGGACCAGTCATCTACAGAATACGACCAAAGCTTCTTGCTAGTATACGCTGTCTTCAAGTCGTACTCAAATCTCCCTCTGATAAACGCGATGGAGTTCACTTTTAGAACGCCTAACGGGCGTCTCAAGAAAGCGTTTGATCCGGAAACTACTTTGAAAGAAGTCAAGAATATCATTGGAAGGACTATTGGCGTCGCTGTTGCGGAGTTGTTGGTCGGCTTCCCACCCAAACCAGTCCAAGGAACAACTTTAGAAGCTGTGAGCAATAACGAAGTCGTCACCATCGCTGAAGGTCCCGATATTCAGATAATTAAGATCAAAGAGGAGCCAATAGAGTCCCGCCAGGCGCGGGACCGTCCCGTGCGAGTAATCGAAGCAAAACGACTGATTTCAGCCGAAATTAACCAACAAAAAATCGCCCAGAAAGTCATCTGCAGAGTTATCTTAGGGGTGTCCCAGGGCCGGCTTTGCCAACTAATGCAAGATACAGTTTACGATAACACTATCCTTTCTAAGCCCTACCCGAACAAGTCTTTACAGCATTACCACAAGATTTACGAGTTTTTAACCCAAAGAAGCCCCATGGAACGCCATAATCTGTACTGCTCGGCAGCGTGGAGGATCGAGAAGGAGCGACTTCAGAAAAAGGAGTCGTACAATTGCACCATGACTCCGTCGAGCTCCAACGGAGAACTGCGAGTTTCGCCACGGCTCAGGATAGGGACACGCGGCAAGAGGACCTATATCCCCAACTTCGCCAAGAAAGCGATGGAAAACTACTTTATAAACACAAGTCGCTTCATTACTCAAGAAACGAGGGAGTTCTTTTCAAGGCAGCTGAACTTACCCGAAGAAACGATTCAGTTTTATTTTAAGAACCTTAGAGCGAGAGAAAAAAAGGGGTCTTTTATCCCTCTGAAAAAAGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCAGAAGCGCAAGCAGAAGCGCAAGTAGAAAGCGCAAGCAGAAGCGCAGAAGCGCAAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCAGAAGCGCAAGCAGAAGCGCAAGCAAGCAAGCACAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAAGCAGAAGCGCAATCATCATTATTATGGTCATCGTCATCATCGCCATTATGGTGATCATCATCATCGCCATTATGGTCATCATCATCATCGCCATTATGGTCATCATCATCATCGCCATTATGGTCATCATCATCATCGCCATTATGGTCATCATCATCATCGCCATTATGGTCATCGTCATCATCGCCATATATGACTCTGTATGTATAACGCAGGCGATTGAACATACGGGGAAAACGTACGATGATATTGGAGAGATGTTCGCTGAACAGCCCAAGGAAGATTTTATTCCGTTAATCGATGGACTTAAAGAGTACTCAGGCATGTTGTCGACGTACCCAGAGATTCTTCAAGTACACAGAAGCTCGGTATCAAAAGTAAAAGATTTGCAAAAACAAAAAGAAGATGAGAAAGTCGAGTATCATCTTCGTATTATCATCAATATCATAATCGTCTTGATCATCATCGTCATCATCTTGCCCACCATATTTATCATCATCATCATAAATAACGTTTTAGGGGCATCATACAAGGGTATCGATGCTCTTTACGATATCTAA

Transcript

Actinostola_18773

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10456	BAR_3_WASP_bdg	WASP-binding domain of Sorting nexin protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR019497	Domain	Sorting nexin protein, WASP-binding domain	Interproscan
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45827	SORTING NEXIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0097320	Biological Process	plasma membrane tubulation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-