Detailed information of Actinostola_17146 in Actinostola sp. Cb2023 Gene info
Gene IDAnnotationScaffoldStartEndStrand
Actinostola_17146RIBONUCLEASEscaffold55_size82452371582139148+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00180Iso_dhIsocitrate/isopropylmalate dehydrogenaseDomainInterproscan
PF00193XlinkExtracellular link domainDomainInterproscan
PF00773RNBRNB domainDomainInterproscan
PF17216Rrp44_CSD1Rrp44-like cold shock domainDomainInterproscan
PF17849OB_Dis3Dis3-like cold-shock domain 2 (CSD2)DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000538DomainLink domainInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR001304DomainC-type lectin-likeInterproscan
IPR001900DomainRibonuclease II/RInterproscan
IPR004434FamilyIsocitrate dehydrogenase NAD-dependentInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR016186Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR019818Conserved_siteIsocitrate/isopropylmalate dehydrogenase, conserved siteInterproscan
IPR022966Conserved_siteRibonuclease II/R, conserved siteInterproscan
IPR024084DomainIsopropylmalate dehydrogenase-like domainInterproscan
IPR033771DomainRrp44-like cold shock domainInterproscan
IPR041505DomainDis3-like cold-shock domain 2Interproscan
IPR050180FamilyRNR RibonucleaseInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR23355RIBONUCLEASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000287Molecular Functionmagnesium ion bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004519Molecular Functionendonuclease activityInterproscan
GO:0004540Molecular FunctionRNA nuclease activityInterproscan
GO:0005540Molecular Functionhyaluronic acid bindingInterproscan
GO:0006099Biological Processtricarboxylic acid cycleInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0016075Biological ProcessrRNA catabolic processInterproscan
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptorInterproscan
GO:0051287Molecular FunctionNAD bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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