Gene detail

Detailed information of Actinostola_16402 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_16402	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	scaffold489_size307309	195109	200132	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_16402

ATGTCTACTTTAACTGAGATTCCATCCTCCCTAAACTGTCTCCTGCATGACATCGGCAAAGATCTGGACGATGATCGAGTACGGTACATGAAATACCTTCTACAAGGACACATCAACAAAGAGACATTACAACATCTCGACTCTGGTCTCGACTTGGTTGAGACTTTGAAGAAAAGCGGACTGGTTTCAGAAAGGCGTCTTGCCTTTTTGCGAAAGCTTCTCGTGGAAGCGAAATGCTTGAAGCTCGTGAATTTGGTGGATGAGTTCAAGGAGAAATATGCTCCTCGCGCCAGTTTTGGGGAACGAAATGAAGAAGAAAGCAAAGCGAAGCGTAACGACAAGAGAGAAGCAATCCTACGAATGATGGAGCGTTTGGAAAACGAAATCACAGCAAACGAAGAAAATGAAGCAGAATGCACCAACGAAATCAAACAATACGAAATGCAAATACAGACAAACAACGAAAGACTCACCAGTGAAGAAGACGAGATCCAGAAACTGAAAGAAAACATAGAAGAGAATCACTCCAAATTCGAATCATTTGAGCGAAAGCTCGAAACTGTTCGATTCTTCCTGAAGAAACACGAGGTCGTACTTGACAAGATAAAACAAAAACTCGACGAAAACAAGAATAGTGCAAGTATAAAAATGGAATTAAAAGAGAAAATAAAAGAATATGAAACTGGGAAAAAGGACGAGGATGATTTGATCTTAAAATATCAGCAAACTCTAGACGACATCAGATCCATCTACGTCGAAATCCGCCATCGTACTGAAGAGATCATTCGTCTGGAAGACCACATCCATGACATCGTCCTGCAAGTTCGTGTCGTTAAACATAGTATACATAAAAACCATCGTACTAAGATGGAACTACAAGAGAAATTAGATAACATTAGCATTGATTTAGCGGAAACTGATCGTCAAAAACCAATGACACCTGGATGGACTTCGCGTTCGCGCAGTCGACTAAAGTCATCGTACAATTCCAGATCAGAATACGTACATCCTGACAGGACAGTGGAGTATAAGGTTCTGGATTACAACGAGCTCGGCGGACCACAGTCAACTGTCATTGGGCGCAAGGGAAAAGGAATCTCTCCACCACAATTCAACTTACCTGTCGGTGTTGCGGTGGATTTCTTGGGGCATCTTCATGTCGCTGATCATGGAAACGGACGCGTTCACGTGCTGGACATTGAAGATGGCACGACTAAAAGACACCCGCTCATTATTGGCGGGAAATGCCGACCTTGCGCACTGACGGTCAGCCATCGAGGAGACCTGGTGATGACCGACTCGCAGATAATCAGGGTTTTTAATAATAAAGGAGAATTCCTTCGTCCCATTTTACCAGTGTACGGCAAGAACGATCGCAGACCACATCTTTGCTCGATTGCTATCGATACCCACGGTTGCATCTACGCTGGTGACCGAGCCAATCACCGAATACAGAAATTTACCTTGGATGGGAAATTCCTGCACTTCATTGGCAACCAGGAGGAAATAAATTATCCAATAGGAATAGCTGTCACCAAGCATGGTGACGTCATAGTATCTGATTACGTCAAACACCATCTGAAGATATTTGCTCGAGAGAAAACGCTCGATGCAAAGACCGTCGGCCAGGAAGGTATTGGTGCTTGTAAATTCGCCTACCCAAGAGGAATAGCGTTGGACCAGCAGGAGAATATTCTAGTTGCTGACAGTCAAAACCACCGTATCCAGGTGGTTACACTAGGGGGTGAATATGTTGGCAGTTTTGGTAGCATCGGAGACGATGCCGGGTATTTTAATACTCCCTACGCTGTAACTGTAGATACCAATGGGAGTGTTATCGTAGCTGATGCTAAGAATCACCGGGTACAAGTTTTTGTGAGGCTGGTTCCAATTTACGCGATAAATGACAACGAGATTGACAACAACGACGATTTGAATTCAGAGAAAGACGGGAACGACATTGAGGTAGAAAGTGGAGAGAAAGAAGAGGAAAACCTCGATGCAGCCGCGAATTCTGCAGACGAAAAAAACAAATTGGAAACTGAGGTGTTTCTAGCCCCGGACGGTGATGAACAACTCACTGAGTCAAAACAAACTACCGATCAAAGTAATATTGATACTAAAGCCAAAGACGTTAAATCAGGTGACGACAGCAAATAA

Transcript

Actinostola_16402

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01335	DED	Death effector domain	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR001875	Domain	Death effector domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-