Gene detail

Detailed information of Actinostola_16279 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_16279	COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN	scaffold479_size310769	188822	199504	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_16279

AAGCTTAGGGAAGCGTTCGCACGAGGAAGGACTTCCGGTTCGACCGAAATGTCTGCCTTTGACTCGATAATACTTCTGTTTACCAATGTGCTTTTGGTTCAAGGCTTCATGTTTGACTCTATGGCTCATATGAGAGACCTAGTCGTCCTCGAGAAGAACTTAGAAGACAATCTCCAGGCTTTCATCACGTCTCATGAAGATACATACGGGCGAATAAAGGACTTGGCTGAACTCATTCACAACGGCACGAGAGTAGCAAAGGTGCAAGGCAGCCATTATCTCGATAGTCCCATTAATGCTTACGCTCTAATTAAGCGATTTACCGAAGGCTGGAGTAGACTTGAATCTCTTCTCAAATTAGGAAAACAATATGACGATTTGATGGAAACTTTGAAGCAAAGCAACGCAACTATCCCTGCAAAGGACGAAAGAGACGTTATCGGAGCAATAACAGCCATTTTGAGGCTACAAAATACGTATAATTTGACTGCAGAATCAGTTATAGAGGGTAGGATACCAGCGCCAGAAGTAGTGAAGTTTCGCAATAACGAAATACACTACCGCCACATGGTCGAACGAGGTGCAGAATTGACGGAAGGTCAAATCGATGCACAGAACGAGTACAACATCGCCAAGACCTTTATGAATTCAACGTACGTGAGATTGTGTCAAGGAAAACCTGTCAAGTTAATTAAGAAGAAGAACAAAAATAGGTTAAAGTGCTGGTATCACGGACGCCGACATCCATGGCTTCTTCTCAAACCAGCCAAGCTGGAGCAGATTAATCTGGAGCCACAGATTTATATATTTAGAGATTTTATAACCGATAAACAAGCAGACAGAATCAAAGAAATTGCGACACCAAAGCTAAGCAGAGCTACAGTATTCAACATGGACACCGGCAAACTGGAAAAGGCAGACTATAGAGTAGCTAAAAGTGCGTGGCTGACGGACAGCTTAGACAAAGTCGTCGCGCAGGTGAATCGTCGAGCGTCGCTGGTTACGGGTCTCGATTATGGATGCGCCGAACATCTTCAGGTGAGACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGCACGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACACGGCACGGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCAAGTTGGTAACTACGGAATGGGTGGACAATACGAAACGCATGTTGATTTTGGGGATGCAGGTACTCCTATATCAAAAGACGCTAAAGGCAATCGTATCGCAACGCTGCTCATCTATTTAAATGAAGTTGCTTCAGGCGGAGCCACGGTTTTTCTCGATGCAGGAGTTCAAGTTCGACCATCAAAGGGTGATGCTGCGTTCTGGTACAACCTGAAAAGATCAGGTGACGGGGATTATACCACATCACACGCTGGGTGCCCTGTGCTGTGTGGTAATAAATGGGTCAACACAAATTACTTTATTCTTGGCCAACTTGCAGTGTGA

Transcript

Actinostola_16279

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07382	HC2	Histone H1-like nucleoprotein HC2	Disordered	Interproscan
PF08336	P4Ha_N	Prolyl 4-Hydroxylase alpha-subunit, N-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR006620	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR009970	Family	Histone H1-like nucleoprotein HC2	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013547	Domain	Prolyl 4-hydroxylase alpha-subunit, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35001	COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004656	Molecular Function	procollagen-proline 4-dioxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0030261	Biological Process	chromosome condensation	Interproscan
GO:0030527	Molecular Function	structural constituent of chromatin	Interproscan
GO:0031418	Molecular Function	L-ascorbic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-