Gene detail

Detailed information of Actinostola_14632 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_14632	PROTEIN CBG26694	scaffold35_size991627	933216	952879	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_14632

ATGTCCAAGTACAGTGTTGATGTGGTGTACATACCCGGAAAGACCAATGTTATAGCTGATGCCCTCTCACGAGTGTGCTTCATGGAGTTGCCAACAACCGACTGCAACAGCTCCCTTATTGAAGTGGACGCAATTACCCAACACTTACCGGCAACACCTGTCAAGCTGCAAGAGATACGCAACACAACAAACGAAGATACCACGCTCAACCACCTGAAAGATGTTGTATACCATGGATGGCCTGAGTACGCAAAGGATTGCCCAAACGACCTCAAAGAGTATTGGAACTTTCGTGAGGACCTGAGTGTTGAAAACGGAATTCTATTGAAAGGCCATCGACTAGTAGTCCCTGAGAAACTCCGCCCACAGATGCTAGAGCTTATCCATCAGGGACAAATGGGAGTAGAAAAATGTCTCCTCAAAGCCAAAGAGTGTTTGTTTTGGCCTGGCATCTCAAAGGACATCAAGGAAATGTCTTCTAACTGTGCTACATGCATACAGTATGCCAAGCAGCAACAAGCACAACCGCTGCAACAACACAATCTGCCCAGTTACCCCTGGCAGAAATTGGGTTCAGACCTTTTTGATTACAAAGGGTCCCAATACCTGTTGTTAGCAGACTACTACAGTAAGTTCCCTGTAGTGAGAAAACTCAACACAACAACATCCACTGCCGTCATTAACCACCTCAAGTCCATATTCGCAGAGTATGGCATACCTGAGACACTTGTTACCGACAATGGTCCACAGTACCATAGCAAAGAGTTCCAAACGTTCTGCAGTACCTGGGGCATCGAACACACCACAAGCTCACCTCTGTTCCCGCAGAGTAACGGCTTTAGTGAGAGGATGGTACAAACAGTGAAAAACCTATTAAAGAAGGCGGATGCATCTGGTCAAGATCACTACCTTGGGATGCTGATGTACCGCACCACACCCATTGACAGTAAATTGCCAGCACCAGCCAGTCTCCTCAACCACAGAGCCTACCGCACTCAGATACCCACAAGCGGACGTTTACAGCGCACACAGACAAGCGACACAGACGCTGAACAATTACAGCACCGCCAACAAGTGCAGAAACTCCAGCATGATGGCAAGTCAACAAGAGAACTCCAAGACCTTAGGCCTGGGCAGACCGTTGCAATGTACAACCCCCATTCAAGAGTATGGAGCCCAGCAGAGGTTACCAAGGAATGCAACGAACCAAGGTCGTATGTTGTTAAAACGCCTAGTGGCTCAGAATTGCGTCGTAACCGAGTTCAGCTTAAACCCTGCGCCCAGCCTGACCCACAAGAACAAATCCATATGAAACAAGTTTGTCCAGGAAAAGTATCAACAGTCACATGTTCACCAGATGGACATTACTGTGTCGTGTCATGTGGGGAAAAGATTTATATATGGCAGGTTGCTACTGGTCATTTACTGGTTATACTGTCCAGACATTTTCAGAGGGTGAGCTGTTTGGCCTTCACAGATAATGGTGCTCATTTCCTATCAGGAGGGGATGATAATCTAGTCATGACATGGGATATGGCACAACTGTTAACAATCCCCCTTTTCCCTCCAGACTCGGTCGAACGAGAGAAAAACAATCCCGTACGCGCGAGGATTGGAGAGAGTTCAGAGGCGGAGAAGGGAGAGGAAAAGAAGGGACTATTATTGTGCAAGACTAACAGTATAACCCAAGACCAGTCATTAACACCTCGGCATACTTGGTCTGACCATTCGTTACCGGTTACAGATATCCACTGTGGGTGTGGAGATTTGAAGGCTCATGTATTTACTTCATCCCTGGACCAAACCTGTAAGATATACACTCTTGGTTCAGGTGAGCTTCTTTGTTCTTTAGTATTTGACTGTGGAGCAACAGCAATAACTACAGACCCCTCAGAATATAATCTTTTTGTTGGTGGTTACAATGGCTCTATTTATCAAATCCATTTATACAAACCTACATTAAAAGAGGAAAACCACATTGAAAAAGACAATCCATTAGTATTTAAAGGACACAGTCAACAGATCACAAGCCTTTGTGTGTCTATGGATGGGTCATTATTGCTATCTGGCTCTAGTGATTGTACAGCACGAACATGGCATATACCAAGTAGACAGTGTACTAGAACTATTTCTCATAAAGGCTCAGTAACCAACGCCCAGATAATCCAACGTCCTGCAAACCTTAACGACCCCTTACCAAGAAACCTATGGCCACCAATACAACCATTCAAAAGGCATCTACAGTCACAGGACAGACAGACAAAGGACTCAAGACTTGGAGACATTCCCATGGTTCTTAGCGAGTGCTTATCAGAGGTCAGTATGATAATATGCTATGGAACTGATGTACAGTCTGATGGTGGCGATCAACGATATCTCGATCGTCAGGGACTACTTCATGAACTCAGCAAACTACAGAAGACCAACCAAGACCTTTATCAGTTTGCTGTCGATCAGCTCATGTGTGAAGTCCAAGAGAATTTAGACAAGTCCTGA

Transcript

Actinostola_14632

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-