Gene detail

Detailed information of Actinostola_12191 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_12191	PROTEIN CBG12474	scaffold224_size478214	1091	25415	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_12191

GTGTCCCAGAAGAGTCTGGAGTTACAGGGAACCGTGACAGTCAAAGGAGACCGCTGGCTCTATCTTACTACTACTTGGAGTCGAAAGACTGGCATGGCATTGTACGTGGATGGCTCACCTACAGCGACGACCCCAGAAGGCATTACAGCTCCTCCCGTGTTTGCACGACATTCCTGGTCTTTTAACACCCTCTCTATAAAAGCAAAGAAGGTTCCTGGCACACCACCTTTAGCTGCTTACGGTGCCTTCAAAAAGGGTGACGGTGGCCTAATGTTTGACGGCAAGACCAATTGGCTGGGAGGCCATCTTCAGCAACCAGATTGTGGCATAGACCCAGACCAATGCATCAGTGGCTTCACGTTGGCTGCTAAGTTGTACTTAGACGAGGCTGTTGCTTCTTACATCGAACCAAAGTACCTGGTAGACACTGGAGCCAGCAGTACTAAGTCACGCGGTTTCTCCATGTATGTCATGGGCGGTAAGCTGTACTTCGAGCTTGCTTCCGCCACCAAGGTTTGGATGGTGACGCAAGATGTCATTCCTGCCACGTGGATATTCGTAGGTATCACGTGGTCACCAGCCAATGGGCTCATTCTTTACCTCAACGGCGAGCAACTTGGCGCCGATGAAGCAGGACGAGTGGCCAGCGGTCGTACGATCAACTTCAGCGGCGAGAACTTGGTTATTGGACGTGACGTCACCAAGGGTGGGATGCATTATAGTAAGTTCGTGATGGCGTCGCTGCTGACCATCGACTCGTACCTATCGCCAGTAATGATGCGTGCAGTCTACTCCTTCTACTGGAGAAACGCTGGAACTACTACCAAGGGATTTGTCGCGCTGCGACTGAGGAACCAGGCTGGGGTTGACGCACTCGTCACTACTAGTGATAACATACCAGCACAAGGCCTGTCGCTTCCCCATCTCTACCCTGTGATCTTGGAGAAGCAGATCGTCCCAGGCTCTACTCTCACGTTAGCAGCAACGGAAGCCCTGGCCAAGACTCCACTTCTACTTAATAAGCACCAAAGTGTTTCAGTGTCTGATAACTTACGAGGGTATCAAATCATCGTGACTAAAGCCACTGCTGTAGCAGGAGTTAAATACTACTTCACCATCAAGATCATGAACCCAACCCGTCAGAACATCATCGTAAAGTCATCCGACAACAATCCCGTAGAAGGGTACCCAGTAAAATCTGCAACTGCGAAAATCATAACCAAGTCTGTGTCCAGTCCTTCGCCTATCACGTTTACTGCTGTGGATTGTACAACGGGACAAAGCGTCAATCTGAACGGTACAGCAGCGAGTGTCACTATTACTCCAACAGCGAAGAAGGGAGAGAAGGTTGTAGTCTGCAAGATTGCAGGAACTCCTAAAGTGTCGGGAAAGAAGAAAGGTGTTATTCCAGATCACGTTGCCTCTGTCTACTACGTTACTCTGAGAGTTAAAAACGGCATAGGATCGAAATTTCTCATTGCTCCCACTTTCAAAGACAGCTCCCATGGATTCCATTTTGGCAGTACCGCCAGTATGCAAATTACTAAAGAGTACATGAGCGACCGTCCAGTCAAACTTCAAGTCTTTGAACAAAGGAGCGGCAAACCATTGCTGATGAATGGAAGACAGATTCTCCTAGTTCGACCTGGTGCATTCGGTGACCCAGCAACACGAATAAAGATAACTAGACCAGCCGGTAAAGTGGTACCTCCAGTCACTGAGCATTACGTCACATTGCTAGTAAACAACAAACTGGATCGCGAAGTTCGAATCATCCCCAGCAAGGGCAAGATGGGCGGCTACATTGTGGGCTCAGGAAACGAGCTCAAAGTGCACATGATAATAAAGGGAGGCCCCGCTGACCCAGCACCAATATCATTCAAGGCTGAAGACGTGGAGACCGAGTCTGGTCTAGAGATCAACGAGAAGGTTACTCCTGTAGCGATCACTCCAGCGGAAATGTCGGATGTGATCACCCATTTTAACATCACAGCGCCAGCTCCCTCCGTCAAGCCACAACACTCTTGGTCCATGTCTGCCTTGAAAGGTAGCCACGTGTTCGGCAGCCCCTCCCTTCACGCTCATGGATTTTATCGTTACATTGACGATGGTCTCTCGTTCGACGGTACTGATACGTTCATGACGACTGTCCTACCCAAGTATGATGGCCTTGTCAATCCTGACAACAGTAACAAAGGCCTCACCGTCGCCACAAAGATTAAATTTGATAAATACGCCATGGAGTACCAAGACGAGCCCAGGTTCATTTTGGACAGCGGTGGACATCACAAGGGCAAGCGCGGTGTATCGCTGTACATCCATAGTGGGAAGCTTTACGCTGAAGTGCAATCGCTGGATAGAATATGGACGGTGGGTCTTGGCATTCTACTATCATATTACGGGGCAGGCCTGCATCTCTTAGAAGATCTATGCCAATTGGGTTTCAAACCTTTGTCCCCCGATGTCTGGATGTACTTAACGATCACGTGGAACAAGAAAGACGGTCTTAAGATGTACAGAGACTCGGTTCTACGAGCAGACGATGATACAGGTCGACCCACGGACAACTCTACCATCATCGACGTGGAGGAGAACCTCACTGTGGGACGAAACATCGGCAACAATGGTGATCTACTGTACGCCAAGTTTGACATGAGTTCTCTGACGACGTTTGGAGAAGCTCTCAATCAATCAGACATCGACAAAGCGTTCATTTTCTTTTCGTCTGGCGCGTCAGCCAAGATATTTTACGCGCCGATACGCATTACCAACGAAGCTGGTCGTACTATCATCGTCAAACCCAGCAAGGGCAATGAACACGGGTTCCACATGATACCACGGTCCACCCTCGAGGTGACCCTGATGTCCATGTCCACCGACGGCAAACTTCCCAATCCTGTGCTGTTTACAGCTGTTGATGAAGCTACAAAACTCCCGCTAGAGATCAACAACAGCCCGAAATCCTTCCCTGTCACGCCAAAGGAATCCATGCAAGACTTTACGACTATGGTTGTAGCCGTACCACAGCCCTCCGTGACCCCCACGTTAGCATGGTCTCTCCAGAAAGTCCGGCATGGCAAGGTTCTTGGCTCTACACCTACTATCCATGCATTTGGCGAACTAAAGGAGGAAGACCATGGCTTGCACCTTGACGGTAAAGACAGCTGGCTCGATGCAGGCGACTTCAAAGGGAAGTGTCTAAGTGACCCACAACGCTGTCCTGATGGATTTACAGTCGGTTTGAAGGTCAAGTTTGACGATGAATCGTCCAAGTATATCCATGAACCTCATTACGTGGTTGACACGGGTGGCTCGAGCTCCAATGGACGTGGATTTACCTTGTTTGTTAAGAACAGAAAGCTTTACGCCACCGTCACGCAGTCGAACAGTGCATGGAGGGTCGAAGCACCATACGCACTAAACAAATGGCTATACACTCTTGTCACATGGAGACCAGACAGCGGTCTTACACTTTACTTTGATGGGTCCCCTGTGGCGTCTTCTGAAGCCGTGGTCGCTCAGAAGGGCGAACATTTGCAGGATTCATTCACGCATTTAGCTGTGGGTCGTAATACGGCAGGTCCGCCATACGGCAACACAAAGATGACCGTGTCTTCTCTGGTATTCTTCGAGCATCATGTTCGACCCGTCGATGCTGAAAAGATTTCTATGTATTACTGGGGCAGTGTTTCGCAGTCGTCATCTGATCGTTTCATCAAGGTCAGGTTTGACAATCGCGCAGGGATCCCAATCAGGATCGTCCCCAGCAAAGGAGACAACAAGAACCAAGGCTACACGATCCAACCACATATGAACCTACAGCTTTCTTACGTGGAGAAAGGTCCCTTTAACGACATCCCGGTCACCTTCCTAGCGCAAAACGCAGCCTCTAATGAGCGACTGTACATCAATGGACGAATAGGCACCTTGAGAGTCATACCCAGTACCTCCAAGACTGCCGTTACTGAAGCTATAGTTGCGTCATCGTATATGTGTCCATCTGCAAATGGTTTCTTCGCCGATCCAACGTCCAACGCGCGCTATATCCACTGTACAGACAAGAACCCCTCCGTTATGTTCTGTCCTGATCAGATGACGTGGCGTTCAGATATCAACTCATGCGCAGGAGAAGGACGCGAGTCTAGTAATCTTTACTACTATAACGTGAGGTTTAATAACTACGCTGGTAACGAGGCTGAGATCATCAAAATAACGGGACACAAGCAACGTAACCTACTGCCACCAGGAAAGGCACTGCATGTCAAGTTCACTACAACCAAGAAACACGCGTCTGTATTCCGTGCAATTTATGCTGATACAGGCGACACGTTGAGGCTGAATGACTACCCCACCCTACAAATCTATCCATCAGACGATCCTGGTAAAGTTACTGAAGTCACTGTCAGTAAACCTGGTAAATATACAAATATACATCCGTTCTTCTATACGATCGAAACCAAAACTGGTAGTCAAGTAGATGCTGATACACAAGCCAACGTGTACATCAAACTGATTGGTGAAGACGGCACGACACCAGACATGCCGCTCGCCCATAAAGGAGTCACTCATTTTAAACTTGGAGGGCTGGATAAATTCCGTGTCGAAGCAACAGACATCGGCAAGATTCAAAAGGTGTACGTCAGGCACGACAATTCTGGTGAATCTCCCAACTGGTATCTAGAAAAGGTCAATATCAGGGACAAGAACGGCAGTCCCTACCAGTTTAACGTCAACGCGTGGCTAGACAAGGAACAAGCAGATCACGTGACCGCCAAACTATTGGATGTAAAGAATCCTTTGTCAGGGCACGCCTTGTGTGATGTTCCCTGCCTTAATGGCGGCACCTGTATCAGCCCCGACTCCAACAAGTGCGCATGCCCAGACGGCTATACAGGCAAATACTGCGATAAACCGAGGTGTTTCCCTGAGTGCATGAACGGTGGTCAGTGTATTGAAGGCTTGTGCCAATGTCCATTGGGCCATTCTGGAAAATACTGCGAACAGGTATCGATATGTGATATCCCTAGTGACCGTGGTCCGTGCTTCCACGAGATCTTCAAAGCAGCAAGCAAAGCTAACAAACAGAACAGAACGTCAGCGTGTATTCGATACTTGGATGATGTTCTACAAAGCTGTACTGCTAACAATGGCTCCTTCACAATTGGCCAATGTAGCAAAATATGCGGGTTAGTTTTCGCTTCTAAGATACTTCAAACTCAAAACGCAAGAACATTGATTAATTTATCCCAACGGGCTCTTCAGAATGATGGTCATGGGTAG

Transcript

Actinostola_12191

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01477	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF01607	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001024	Domain	PLAT/LH2 domain	Interproscan
IPR002557	Domain	Chitin binding domain	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR036392	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR036508	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR052970	Family	Inner ear hair cell lipoxygenase homology domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45901	PROTEIN CBG12474	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0008061	Molecular Function	chitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-