Gene detail

Detailed information of Actinostola_06538 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_06538	PROTEIN CBG26694	scaffold69_size775606	415807	422586	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_06538

ATGGATCCACCAGCACCGTTTGCAAACCTGACTGCAGATTGTCATCCTATCATCACTAAGTCAAGACGTTACAGTCAAGAAGATCTGGCCTTCATCAATGGAGAAGTGGAGAGGCTACTCAAAGAAGGCATCATAGAGCCGAGTCAATCTCCATGGCGAGCTCAAGTTGTAGTGACTAAAGACGAAAACCACAAGAAACGACTGGCCATAGACTACTCCCAGACTATCAACCGATTTACACTACTAGATGCCTTCCCATTACCCAGAATCAATGACACTATCAACGACATTGCTCAGTACCGAGTCTTCAGCACCGTCGACCTGAAGAGCGCATACCACCAAGTGTCCCTCAAAGACGAAGACAGACCATATACCGCTTTCGAAGCTCGAAATGGCCTCTTCCAGTTTACACGTCTTCCTTTTGGTGTGACTAATGGAGTGGCGTGCTTCCAAAGGGAGATGATGAAACTTGTGCAAGAAGAAGATCTTAAAGCGGTATTCCCTTACCTGGACAACATCACCATCTGTGGTAAAAACCAAGAAGACCATGACAAAAACCTGACATGTTTTCTTGAAGCCGCTAAACAAAAGAACATAACATACAATGATGATAAGAGCATCTTTTCAACCCGGCGCCTTCCGATCCTGGGATATGTCATCGAAGAAGGAACCATCTGCCCGGATCCTGAACGGCTACGACCGCTGCGTGAGCTTCCTGTTCCACATGACACCAAGGCCCTCAATAGATGCCTGGGGTTATTCTCTTACTATTCACGATGGATCCCGGCATACTCTGACCGCATCAAGCCAATCACCAGCGCAAAGTCATTCCCTTTACCTCAAGAGGCTGTAAAGGCATTTCAAGGGATCAAGAAGATAATAGAGGAAGCAGTTGTTACAGCAATTGACGAGAATACACCATTTGAAGTGGAGACTGATGCCTCAGATGTAGCGTTGGCAGCTACTCTCAACCAAAAGGGAAGACCTGTTGCCTTCTTCTCAAGGACTCTGCAAGGGAGTGAGCTGAAACATGCGTCAATTGAGAAGGAAGCCCAGGCGATTGTCGAGGCATTGAGACACTGGAAACATTTCCTGACTGGAAGACATTTCACTCTTACGACTGACCAAAAGTCTGTATCCTACATGTTCGACCAGCGCCACAAAGGCAAAATCAAGAATGACAAGATTATGCGTTGGAGGATTGAGCTCTCTTGTTACAGTTTCGACATTGTATATCGACCGGGAAAGGACAATATCCCACCGGACACTCTATCACGCGCCACTTGTGCTGCAGCTACACAAGATTCCCTCTACAAGCTTCACCAGTCACTCTGCCATCCAGGCATAACAAGACTTTGGCATTTCATACGAGCCAAAAACCTCCCATATTCACTTGAGGAAGTCAGGCAGATGACGAATTCGTGCCCTGTTTGTTGTGAGTGTAAACCTAAGTTCCACCATCCCGAGGAAACTCATCTCATCAAAGCTACTCAACCATTTGAAAGGATCAACATCGACTTCAAAGGCCCGTTGCCATCAACTAACAAGAACAGATACTTCCTCAATATAATTGATGAATTCTCCAGATTTCCATTTGTATTCCCATGTCCTGATGTTTCCACAACGACAGTAATCAAGTGTCTCACCACACTCTTCTCTCTCTTCGGGATGCCAGCGTACGTTCACTCAGACCGAGGGGCGTCTTTCATGAGCCATGAGTTACGAGCCTTCCTCACTGAAAAAGGGGTTGCGATGAGCCGTACCACTAGCTACAATCCGGCTGGCAATGGTCAAGTTGAGAAGTATAATGGTACCATCTGGAAAGCGATTACAATGAGTCTTAAATCCAATAACCTTCCAATAGAGCATTGGCAGGATGTCCTCCCAGACGTGTTGCACTCAGTCCGTTCACTCTTATGCACCGCAACAAACGAGACACCTCACGAACGTTTCCTTGGGTTCTCACGTCGGTCTTCGGCTGGCAGTTCTGTTCCTACATGGCTAGCTACTCCTGGTCCGATCTATGTCAAGCGTAATGTCCGGAATAGCAAGACTGACCCTTTGGTGGACGAAGCTGAGTTGCTTCAAGCGAACCCCCACTATGCACATGTGCGCTACCCAGATGCATCAAAGGTCAAGAAAGATGATAAGGAAGAAGATAAGCAATATCAGTATGAGGAAGATGAGGAAGATGAGGAGAGATTTTCTGAGGAAGATGATGAGTATCTTTACCGGCCAATGATAGACCTTGAAGCCACCACAGTCCATACTAGGGTGGAACAGGACAAGGTCTACCAGGCAAGTTTAGTTGCAGACCAGGCCAAAGAAGAGGAGAGAAGAGAGGTAGACGACGAGTATCTTTACCAGTCAATAATAGACCTTGAAGCCACCAGAGCCCTTAAAGTAGAACAGGACAAGGCCTACCAAGCAAGTTTAGTAGCAGACCAGGCCAAAGAAAAGGAGAGAAGAGATCAATTGCAGTCAAATATTAAAGAGGGCAGAAAGCCAACACTGGAACAACAAAGGCTAGAAATAGTTCAATCACTTGAAGAGGATGGTGCAGCCAAAATTGTCAACTTGCAAAGATGGAACATTGTCTCTGAATTAATGAACCTGTATGAGAATGACAAGGAGATAGTAGAGAACATCATGACATTTCAACTTGAAGGTGAAATGGCAAGTGACTTGGGAGGTGTAAGCAGAGAAGTCTACTCATCGTTCTGGAAGGAAGGATGTGCCCAGTTTTGTGAAGGCAATGAAACCATTTTTGTACCACGACATAGTGGTCTTTCCAAAGGAGAATATATCACTCTTGGAAAAATCATTGGCCATGGGTATGTTTTGACTGGCTTTTTCCCAGTTATGTTAAGTCAGTCATACATGCAATCAGTTTTGATTGGCGAAGAGACAGTTAGTGATGACTTTGTGATGACAGACTTTATCAACTACTTGTCACCATATGAAGCCAATACACTTCAACATATCCTGACGTCACCAAAGCTAGAAGTTGATGATATTGATTTTGTCATTGAATTAGAAGATAGATATGGAATGAGAATCCCCCCTAATCCATCTAACATAAGAAACATTGTACAGCAGATGGCACGATCTGAGCTACTAGAAATGCCCATGTTCACAATGAAATATCTGAAGCGAGGGATGATGTCCAGCAGTTATGGCGAGCAGCTGTGGAAAGACGTTTCAGCAAACAACCTGAATGAGGTGTACCAAGCACAGAACCCGAACCCTTCTACGGTATTATCCTTGCTGACTTCAGAAGATGAGACCACATTGAGTGCACAGGAGGTGAAGATATACACATTCTTGAAACGATATGTAAGGAATCTTGACCAGACGAAGTGTGCACATTTCCTAAAGTACTGCACTGGTAGCACTACAGTTGTAGTGAAGAAGATTTCAGTAACCTTCTACAACACAAACTCAACAGAGCCTCTACCAAAAGCGCATACCTGTGGGGCAGTGTTGGAGATGCCTTCCAAGGGGTATGCAACATTCAATTTATTTAAGATCATGATGGATAGCCTTTTGGAAAATCCAATGGCCTATGTGTTCAGGTTTCAATGA

Transcript

Actinostola_06538

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00632	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000569	Domain	HECT domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-