Gene detail

Detailed information of Actinostola_05811 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_05811	CRUMBS FAMILY MEMBER	scaffold57_size835393	785370	803058	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_05811

ATGCTGGCTATGGCCGGGGGGAAATTAACTGGGCGCTCTGACTGGCATTCATCCCAGAAGTGGTGCGGTGGAGCCGAGCTTCATCTGGGCTACCTCAATGGCGACAAACGTGCAGACATGCTGTGTCATCGTAAATCGGATGGATATAAGTGGGTGGCAACTGCAGGAGCACAAATTAAAAGTCTTTACTCGGGAACCAACTGGCATAAGGCAATGAACTGGTGCGGCACTACGGGAACACTTTTCCTTGCCGACTTCAACAACGACGGCAAAGAAGATCTTCTCTGTCACGAACAATCAACTGGCAAAAAATGGATTTCCTACAATCGCTATCCTTCTAAAGGTGGGTATGACAATTTCAAACTTAACTTCTGTTGGCTAGGTGACACTTGGGTGTTACAAACTCCGTGCGAACCAAATCCATGCAGAAACAGTGGACAATGCATAGCCTCGCGCCGCCGGGCTGATGGTTATCGATGTCAGTGCAAAAATGGTTTTATGGGAAGGATGTGTGAAATCGACATCGACGAGTGTAAGACCAGTCCTTGTAAGAATGGCGGCATCTGCAGCAACACACGTGGAGGGTACACTTGTAAGTGTGCTTCAGGCTTCAAAGGAAAGCACTGCGAGCAAGGTCCAGATTACTTCGGGTCCACCGACTGGTACAAAGCCATGGGATGGTGCACTCATAAGGGTAGCAGAGTGCTCACTGGTGATTTCAACGGGGATGGAAGAGCTGACATGTTGTGCCACGACAATAAGGGAAACAAATGGGTTGCCCTGGCCAACGCAGCCGCTCAGTTTACAGGCACCTCCTGGCACAAGTCCATGGGATGGTGTTATCACGCAGGCGCCGAACTGCACCTCGGTGACTTCAACGGCGACGGAAGAACCGACATGCTCTGTCACGACCGTGCAGGCTACAAATGGGTTTCCTTGGCAAATGCGGATGGCAGCTTTTCCGGTACTTCTTGGCACAAGGCCATGAAATGGTGCTCCCACGCGGGTTCTCGTCTCATGATTGGAGATTTCAACGGCGACGGTCGATCTGATCTGCTTTGCTACGACAAAAATCACAAATGGATATCTCTTGCTCAACCAGAGGGAAGCTTCGTGGGCACGTCATGGGACATGGCCACTACTTGGTGTAGTCACGCTGGGTCATCCATCTACATTGCTGATTTCAATGGCGATTTGCGAGACGATCTTTTGTGTCACGACACCGTCGGCAGAAACTGGGTCATGCTGGCTATGGCCGGGGGGAAATTAACTGGGCGCTCTGACTGGCATTCATCCCAGAAGTGGTGCGGTGGAGCCGAGCTTCATCTGGGCTACCTCAATGGCGACAAACGTGCAGACATGCTGTGTCATCGTAAATCGGATGGATATAAGTGGGTGGCAACTGCAGGAGCACAAATTAAAAGTCTTTACTCGGGAACCAACTGGCATAAGGCAATGAACTGGTGCGGCACTACGGGAACACTTTTCCTTGCCGACTTCAACAACGACGGCAAAGAAGATCTTCTCTGTCACGAACAATCAACTGGCAAAAAATGGATTTCCTACAATCGCTATCCTTCTAAAGACATCGACGAGTGTAAGACCAGTCCTTGTAAGAATGGCGGCATCTGCAGCAACACACGTGGAGGGTACACTTGTAAGTGTGCTTCAGGCTTCAAAGGAAAGCACTGCGAGCAAGGCCCAGATTACTTCGGGTCCACCGACTGGTACAAAGCCATGGGATGGTGCACTCATAAGGGTAGCAGAGTGCTCACTGGTGATTTCAACGGGGATGGAAGAGCTGACATGTTGTGCCACGACAATAAGGGAAACAAATGGGTTGCCCTGGCCAACGCAGCCGCTCAGTTTACAGGCACCTCCTGGCACAAGGCCATGGGATGGTGTTATCACGCAGGCGCCGAACTGCACCTCGGTGACTTCAACGGCGACGGAAGAACCGACATGCTCTGTCACGACCGTGCAGGCTACAAATGGGTTTCCTTGGCAAATGCGGATGGCAGCTTTTCCGGTACTTCTTGGCACAAGGCCATGAAATGGGGAAGCTTCGTGGGCACGTCATGGGACATGGCCACTACTTGGTGTAGTCACGCTGGGTCATCCATCTACATTGCTGATTTCAATGGCGATTTGCGAGACGATCTTTTGTGTCACGACACCGTCGGCAGAAACTGGGTCATGCTAGCTATGGCCGGGGGGAAATTAACTGGGCGCTCCGACTGGCATTCATCCCAGAAGTGGTGCGGTGGAGCCGAGCTTCATCTGGGCTACCTCAATGGCGACAAACGTGCAGACATGCTGTGTCATCGTAAATCGGATGGATATAAGTGGGTGGCAACTGCAGGAGCACAAATTAAAAGTCTTTACTCGGGAACCAACTGGCATAAGGCAATGAACTGGTGCGGCACTACGGGAACACTTTTCCTTGCCGACTTCAACAACGACGGCAAAGAAGATCTTCTCTGTCACGAACAATCAACTGGCAAAAAATGGATTTCCTACAATCGCTATCCTTCTAAAGATATCGATGAATGTAAAACCAGTCCTTGCAGGAATGGCGGCGTCTGCAACAACACACCAGGAGGCTACACTTATATCGATGAATGTAAAGCCAGTCCTTGCAGGAATGGCGGCGTCTGCAGCAATACACCAGGAGGCTACACTTGTAAGTGTGCTTCAGGCTTCAATGGAAAGCACTGCGAAATTGATATCGATGAATGTAAAGCTAGTCCTTGCAGGAATGGCGGCGTCTGCAGCAACACACCAGGAGGCTACACTTGTAAGTGTGCTTCAGGCTTCAATGGAAAGCACTGCGAAATTGATATCGATGAATGTAAAACCAGTCCTTGCAGGAATGGTGGCGTCTGCAGCAATACACCAGGAGGCTACACTTGTAAGTGTGCTTCAGGCTTCAATGGAAAGCACTGCGAAATTGATATCGATGAATGTAAAACCAGTCCTTGCAGGAATGGTGGCGTCTGCAGCAATACACCAGGAGGCTACACTTGTAAGTGTGCTTCAGGCTTCAATGGAAAGCACTGCGAAATTGATATCGATGAATGTAAAACCAGTCCTTGCAAGAATGGCGGCGTCTGCAGCAACACACCAGGAGGGTACACTTGTAAGTGTGCTTCAGGCTTCAATGGAAAGCACTGCGAAATTGATATCGATGAATGTAAAACCAGTCCTTGCAGGAATGGTGGCGTCTGCAGCAATACACCAGGAGGCTACACTTGTAAGTGTGCTTCAGGCTTCAATGGAAAGCACTGCGAAATTGATATCGATGAATGTAAAACCAGTCCTTGCAGGAATGGTGGCGTCTGCAGCAATACACCAGGAGGCTACACTTGTAAGTGTGCTTCAGGCTTCAATGGAAAGCACTGCGAAATTGATATCAATGAATGTAAAGCCAGACCTTGCAGGAATGGCGGCGTCTGCAGCAACACACCAGGAGGCTACACTTGTAAGTGTGCTTCAGGCTTCAATGGAAAGCACTGCGAAATTGATGTGAATGAATGTGCCGTCAACCCCTGTCAAAATGGTGGACTATGTATCAACGTACCTGGAAGTTACAAATGCAATTGTGTTGATGATTTCACAGGGCAACACTGTGAAACAGTTACTTATGAGGAAATTGGATGCTATAAAGACAACGGTGGAAATGAACGACCATTACCCATACTTGTCGTTAACCTAAGACCATCCATTGACTGGAACAACTTGAAACTCACTGTGGAACAATGTGCAGCATCTGTTAGGAAAGCAGGATACACGTACTTTGGTATTCAGTTCTACGGTGAATGTTGGAGTGGACCAGATGATCAAGTTGATTATGACAAACATGGAAAGGGTACCGAGTGTGTTGTTGGCGTTGGTGGCACTGGTGAAAACATGGTCTACAAGATTACGAGATAA

Transcript

Actinostola_05811

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF13517	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013517	Repeat	FG-GAP repeat	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR028994	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991	Cellular Component	protein-containing complex	Interproscan
GO:0045197	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-