Gene detail

Detailed information of Actinostola_04443 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_04443	TNF RECEPTOR ASSOCIATED FACTOR	scaffold39_size949411	438351	508312	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_04443

ATGGCATCGAGGGCTCAAATGGTTTCAAAGCTGATCGAATTAGCAGATATTTTGAGTGACAAGCAAGGAAATCTTGTGTCGTTCATGGCTATCATCGATGGGCTTGCACTGCCTCAGGTCAGTCGTCTACACCACACGTGGTCGTGCCTGCATCACCAATTCTCCTCGTCAGCGGTTCTCATCCACAGCACTCTGAAGCCCCTCGCGGGACTATTATCATCCGGCGCTCCAAGCCCTTTCCCAGGAGTGTGCTTACCATATATGGTCCCTTTAGCAAGGCTTTTGGAGACTACCAGTGAATCAAATCTTGACGAGTTGATTGAAGATGACGAAAGCCACGGCTTGGAGATTGTGCTCGCGCATTTGAGTGTCGGCAGAACGCTCATTCAGCAAGTGGACGTGTTCAGAAACGAAGCTAAAAAGCGGATAGTGCTTGAAGATGAGAACTCAGCTTTAATGGGATATTTTCGAGACGGAATCGACGACGAGAAATTTCTTATAATAATAGTCAGACAGTTCGGATCGTCCTTCGTCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTTGCTAGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTGGTCGAATCTGCTGCTGGTCGAATCTGCTGCTGGTCGAATCTGCTCCTTCCAATCTGCTGCTACCAATCAGCTGCTACCAATCTGCTGCTACCAATCTACTGCTTCCAATCTGCTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCAACCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTTCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTTCTGCTACCAATCTGCTGCTTCCTATCTGCTGCTACCAAACTGCTGCTTCCAATCTGCTGCTACCTATCTACTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTACTGCTTCCAATCTGCTGCTTCCAATCTGCTGCTGGTCGAATCTGCTGCTGGTCGAATCTGCTCCTTCCAATCTGCTGCTACCAATCAGCTGCTACCAATCTGCTGCTACCAATCTACTGCTTCCAATCTGCTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTTCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTTCTGCTACCAATCTGCTGCTTCCTATCTGCTGCTACCAAACTGCTGCTTCCAATCTGCTGCTACCCTACCTATCTACTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTACTGCTTCCAATCTGCTGCTGGTCGAATCTGCTGCTGGTCGAATCTGCTGCTACCAATCTGCTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTGGTCGAATCTGCTGCTGGTCGAATCTGCTCCTTCCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTACCAATCTTCTGCTACCAATCTGCTGCTACCAATCTTCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTACTGCTTCCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTGGTCGAATCTGCTGCTACCAATCTGCTGCTACCAATCTACTGCTACCAATCTGCTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTTTCCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGTTACCAATCTGCTGCTACCAATCTTCTGCTACCAATCTGCTGCTTCCTATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCTATCTACTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTTCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTACTGCTTCCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTACCAATATGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTTCCAATCTGCTGCTTCCAATCTTCTGCTACTCTGCTGCTACCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGTTACCAATCTGCTGCTACCAATCTTCTGCTACCAATCTGCTGCTTCCTATCTGCTGCTACCAATCTGCTGCTACCTATCTACTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTTGTGCTACCAATCTTGTGCTACCAATCTTCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTACTGCTTCCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTTCCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGTTACTAATCTGCTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTGGTCGAATCTGCTGCTGGTCGAATCTGTTCCTACCAATCTACTGCTACCAATCTGCTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTACCAATCTACTGCTTCCAATCTGCTGCTACCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTTCCAATCTGCTGCTGGTCGAATCTGCTGCTTCCAATCTGCTGCTTCCAATCTGCTGCTACCAATCTGCTGCTACCAATCTGCTGCTAGTCGAATCTGCTGCTGGCGAATCTGCTGCCAGAATGAATCTGATAACAGCTCTGCACTGAAGAAAACTAGTCAAACAATCAATCCTAAGGCTGCACATATAAGAACCACCAACTCGAATGGTGCTAAATGTCTTGTTGATGGGCAGTCAATCACCAAGGCCTCGTTGAAATATCATTACGAAGAATGCGAGGAGGTCGAGCGGGAATGTGCTTTTTCCTCCATTGGCTGCAAGGAAATCAAGAAGATGAAGAAGAAACATCGCCAGGAACACAAGAAGTCGTTCATTATGTTTCACTTGGACTTGCTTCTTGGTATCTTAATCATGATCAGGGACCAAATACAGCGGGTGCTGAACGAATGGGCACTTTTCCGTGAGGAGCTTAAATCAAAGATGTCGGACATGATGTCCCAAATAACGGCCCTCATCATCAGCAACACGGACATTAGAGAAGAGCTAAAAACACAAAGTGAAAAAACAAAGACGCTGGAGGAATCTTTGAGAAACGAAAATGGAGAAGTTTGCAGAAAGAGAGCCCGACTGGACGAAGACACGGACGAATTTGTGAAGCTTAAAAGAGAAGTTCGACGCCTCTCACAAGCATTGTCTGATATGCAAGACTCTCTGAGGCACTACCAGGGACAACTGGAAAGTCATAGCCAGGTTGTTGGCTTAAGCAGTCTCAATCTGAACGACTTTGAACACGACATTCGTCAACTCGAGAGAACAAACTACGAGGGAATCCTTGTATGGAGAATAATAGATTTTGCACAAAGAAGAAGAGAAGCCATCAACGGCATCAAAGCATCATTCTACTCACACTGTTTCTATAGCAGTCGCTATGGTTACAAGATGTGCGCGCGCATCTATCTCAATGGCGACGGAATTGGCAAAGGAACGCATATTTCATTGTTCTTTGTGCTCATGCGCGGGGATTACGATGCGTTACTCCGCTGGCCATTCAGACAGAAGGTCACATTGATGATATTGGATCAGAATCAACAGGAGCACGTGGTTGATGCTTTTATGCCCGATCCCAATAGCTCATCGTTCCAAAGACCAAGACAAGAGATGAATGTTGCCAGCGGCTGCCCCAAGTTCTTCCCGCTTTCTGAGCTGACCGACCACGCCTTTGTTAAAGATGACTGCATGTTCATCAAGATGATTATCGATAAACCAGACTAG

Transcript

Actinostola_04443

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00617	RasGEF	RasGEF domain	Family	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0009898	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-