Gene detail

Detailed information of Actinostola_03388 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_03388	FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEIN	scaffold280_size429689	342302	374789	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_03388

ATGTCGGACCACGGAGAAGCTTTGTGGAAGGATGATGGTGACCTTAAAGATGCTATCTCGAAATATGTTCGACAAGGCTTACAAAGAGGTGAAATGTTGGATTTCTTGACTCGTGACTTCCCAGAATATGCGTGGAGTATGAGAACACTCGACAGACGACTCCGGCATTTTGAAATATATTTTAATGACGCAGGCATAAGCGTTGATGATGTGAAGAAGGCAGTAGAAACTGAACTGAAAGGTCCAGGTAAACTGTTGGGGTATCGAGCAATGCACAAGAAGATCAGACAAGAACATGGCCTTAACGTGACACGAGATCAAGTCTACGATGTCATGAGCGAGCTTGATCCCGAAGGTCTCGAAGCAAGAAGTGGTATTGGTGGTAAGAAAAAGCGTAAAAAGGGCAATTTTACTACAAAAGGGCCCAACTGGGTTCACTCACTTGATGGTCATGACAAGTTAATGGGCTATCAAAATTCAACCTTCCCATTGGCCATCTATGGTTGCCTTGACACAGCTAGCAGAAAACTTCTGTGGCTGAGAGTATGGGTCAGTAATAGTGACCCAAAATTGATTGGACGATGGTATTTAGAACATCTGTATGAGACAAGAATGATCTCAGCCATTCTGCGAGTGGACAAAGGGACAGAGACAGGGGTGATGGGAACCATGCATTCATTCCTTAGGAGACACCATGGAGATATGAATCCACATGATACAGTTCTCTATGGTCCTTCAACATCAAATCAGAAGGAGCTGGATGTTTTCAGAGAAACAGTATGGAACACACACAGGATCCGAGCACAAAAAGACACTGTCCTTCCTGATGGTATACCAGACCATATCTATAACTTCCCAGAACAGTACGGCCTTGAAGAATGTGGTCCAAGCACATGGAACAAGACTTTTCCTCAATGTGCTGGCAAACGACAATCTCCAATTAACATTATCCCCAAAGACGTGCCATTTGATGGATCTTTTAATGACTTGGACATTCGCTATGCAGCAAGTGTAGATGTTAACCTTACGAATAATGGCAGAGCAATCACTGCAAATGCTTTCTCGAGCGACATGCTCAATTTCACCGGTGCAGGTGATGCCAATCCTGCGTTGGAAAAGATTGTCAACAACCTTCAAAACTGCACTTACAAGGGACAAAGCGTTCGAGTGCTGGCACTTTCGGTCAAAGATTTACTTCCAAAGGACACGACAAAGTTTTACCGCTACTCTGGCTCGTTCACAACACCACAGTGCAATGAAAGTGTGGAATGGATCGTGTTTCACCAAACGGTTTCAATTTCCTCGAGTCAGCTGGACAAATTTCGTGGTATTTTTGCCAGCTCGCCGCAAAATACAAAAAAGATCCCTTTGGTGAATAATTTCAGACCTGTTCAACCTTTAAATAGCAGGATTGTCAGGAAAAATTTCGCAAATCTTAAATATGGAGCAACTATAGAGATGCATTTCCATTCTGATGGATCCAAAGCTGGTCAACTACATGTCACTGTGTATCAGGTTTCATTGTCTCAAGTTTCCAACAAAACTAAAGTTATCAATAACTACTTTCAAGTTGAGGGAGGTTATGTACGCAATATCCATCAGGATCAAGTGAGCGTCGTCCTTGAACACGACTTGAACACTCCGAAAAGAGTTTCATATGAAGAAGTCCGTCTACCACCAAACACTACCCAGCGAAAGGATCTCTACGTGGACGACGAAGTCGAGTTTTATGTTGTTCAGTACAATGGTTGGGATGCAACATTCAATGAGATTGTACCAAGAGAACGCATTAGGCCATCCAGTTCCAAATGCAAAGAAGACAGCTGTCACCGGGAGTTCAAGAGGCAGTGTCATGCAGCATGCGTTGGATACAATGATAACATGAATGTCCTTGTAGTTTTGATGGCCAAGAACAAGATGGGGGTATGCGATAAACTGAAGTTACCCGAGCACCTAATGGGTTTGGCTATCGGTGCTCAAGGAGCCAATATACAACAAGCAAGAAAGCTACCTGGTATCATGTCTATTGAAGTTGACGAAGAAAACTGCACTTTTTATATCTGTGGCGAGAATGAGACTATAATCAATGAAGCAAAACGTTTACTAGAGTTTGCTGAAGAGACAGTGTATGTGTCAAAACCACTTGTAGGTAAAGTTATTGGTAAGAATGGCCGTATTATACAAGACATGGTAGACAGATCTGGCGTTACAAGAGTGAAGATTGAGCCTCCAACAGAGAATGAAACAGAGGAAGAAAAATCTGCAAAGGAAATTGAGAACATGAAAAGAGAAAAGGAAGGTTTAGATCAACAATTGCAGAACATGGGTATAAGTCCACCCACTGGCCCCTCCTACATTCCTACCCCTGCAGAGATGCGCAGTGGCACTAACCTTATGATCGCTACGCATGACTCTACCAGTAGTGGTGGACGAGACAGATCGCTTACTACAGACAGCTATGGAGGCGACCTGAACGAGGCACTATCCATTAGTACAAACCCTGGACAAAAAGGAAGAATTAATACAACTGTTAGAATAAGATCGAGTAGCGAAAGTGACGGCAACACTGACAGTGGTCGACAGAATGCAAGCAAAAGATCAAACACACCTACATCAGACTTGAAAGGCATTCCAGAAGATAATGAAGAACACAATCATGGAAGACACAGCCATAAGGATGATGCTTATTCAAAGACATCACATGGCAAGAAACCTTCACCATGGTTTATGGGTCCAAGAAAACGCTCCAACAGTGAAGGCAAGGATGAAAAAAATGATGGACGATCGTATAATGGTTTCAGCAGAGGACCAAACAGACAATGGAACCAAGGCAAGTCACAGCCCCGGCAACCCATAAACCGTCCCCGTGGCAACAGTGCAGGGTCTGCTCCAACTCAGTTGAGACCCAACGCAGGAAGCCTGGGTCAGAATTGGAGGAAACCAGATAACGCTCGTAGGAAGAGTGATGACGCTGAGAAAATACTGGATGGAGGTAGCAAGCAGGGAGGGCAGAAAAGTGAAGTAAAACCACCAGAAAGCTCCAAAGAAGTGGACGTTCAAAAACCTAATGACACAGAAACCAAAGAAACCAAAGACAGCAATCCAAAGGCCACAGAGGAGAATCCTGTTAAATCAGCAGAAAGTACAACATCCAAGGACAACACAGATGCAAAGTCAGTAAACACAGAAAGTAAATAA

Transcript

Actinostola_03388

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan
PF00194	Carb_anhydrase	Eukaryotic-type carbonic anhydrase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001148	Domain	Alpha carbonic anhydrase domain	Interproscan
IPR004087	Domain	K Homology domain	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR036398	Homologous_superfamily	Alpha carbonic anhydrase domain superfamily	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR040148	Family	Fragile X messenger ribonucleoprotein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10603	FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005844	Cellular Component	obsolete polysome	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0036464	Cellular Component	cytoplasmic ribonucleoprotein granule	Interproscan
GO:0042803	Molecular Function	protein homodimerization activity	Interproscan
GO:0043488	Biological Process	regulation of mRNA stability	Interproscan
GO:0045182	Molecular Function	translation regulator activity	Interproscan
GO:0045727	Biological Process	positive regulation of translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-