Gene detail

Detailed information of Actinostola_03387 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_03387	OUTER SEGMENT 5	scaffold280_size429689	378139	407063	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_03387

ATGCTCTTTACAAATAAAGAACTTGTCAGCTGTGTTGGCTGGACTACATCAGAGGAACTATACTCCAGTGGGGATGACCATTCAGTTTTAAAGTGGAATTTATTATCTGGTGAGACGTCACAGCTGGTCAAACTACCTCCAGATGTGTTTCCTACAGACCTTCACTGGTATCCCAAGTCTGTGGGCGGTAAAAAAACAAGTCAGGCTGATATAATGGTCGTGACCTCAACTGATGGCAAGTTTCATTTGATATCGCGTAATGGTAGAGTGGAGAAGTCAGTAGAGGCTCATAGAGGTGCTGTACTGTCAGGAAGGTGGAGTTATGATGGGAATGCTTTGGTAACTGATGATAAATACAATCTTGTGGATCTGATAAATGTTTGTATCGAAGGAACCCCTGTGTATTCTGTATCCTGGAGTCCAGATTCAGACCAGATTCTTTATACCAATGGCAAACAGCTGGTTATCAAACCACTGCAGGCTGCCGCTAAACCTATCCAGTGGAAAGGACATGACAGCATTGTACTCCAAGTTGATTGGAATCCATTAAATAACTTGATTATCTCAGGTGGAGAAGACTGTAAATATAAGGTGTGGGATAACTATGGTAGAGTCATGTATTCAAGTTCTCCTCATGATTATCCAATAACTAGTGTGTCATGGGCACCTGATGGTGAACTCTTTGGAATTGGATCATTTAACACACTCAGGCTTTGTGACAAAACAGGGTGGTCATATTCTCTGGAGAAACCCAACACAGGTTCTCTATTCAACATATCCTGGTCCACTGATGGAACCCAGCTTGCAGGGGCTTGTGGGAATGGGCAGGTTATTTTTGCCCATGTCATTGAAAGTGTCAAGAATTGGAATACACCGATGATCTTTGATTTGAAAAATGGGAACATTACTCTCATTGTTCTTACTGAAAAGTGTTTTCTTGTTGTTGATGATGCTGGACTACAGATTTATTCATACGAAGGCCGACTAATCAGTGCCCCAAAGATCCAGGGTTTAAGGACAGATGTGTTGAATGAGCAGACAGTGACTCTCAGTAATGATACTATTGCAATCAAAGACCGTAAGGATGAAAAATTGGTGTACCTGTTTGAAACTCTCAGTGGAAAACCTGTGGGTAGTGGAGAGCCATTAGTACATACGCTAGAAGTTGCAGATATTGCTGTAAGTCAGTGCGGACCATCGAGTGATAGACAGCTGACAATCATAGACAAAAACGGAGACATGTACTTGGCGCCTGTGAAGCACATTGGAGCTGCTGGCAAGTTTGTAAGGCTAGGGACAATGATTACGACTATGGCTTGGAATGACACCACAAATATGCTGGCTGCTTTTCAAGATGGTAACTTTACTGTCTGGTATTACCCTACTGCAGTATTAGTAGACCAGGACATCTTACCAAAGACTTTACTGGAAAAGGACTCCAGTATTTCACCCTACCCAGCCATGCTGCATAAGTATTGTTCTGAATCCAAATGGGAAGATGCTGTTCGACTTTGTCGATTTGTTAAGGATTCGGCACTTTGGGCTTGCCTGGCAACAATGGCTGCATATGCAAAGGATTTAAACACTGCCGAGACAGCGTATGCTGCAATAGACGAGGCTGATAAGGTACAGTACATCAATCACATAAAAGAGATCCCAACCAAGGAAGGACGCAATGCAGCCATGGCTCTGTTTTGTCGGCAGACACAAGAAGCAGAGTCCATACTTCTACAGGCAGGTCTTGTTTACAGGGCAATACAGCTCCATATCGACCTCTTTAACTGGGACAGGTTGAGGTTGATTGGGAGAAGGTTTGTGGTTCGTGATATCTGGGTTCTTATCTACTCGTTTTCTTCTCATAGAAATCCTTTACTTCGTGGTTTAATGTCAAGGTCTCTATCAACAGAAATCAAACCCATTGATAAAGTACTGATAGCCAACCGTGGTGAGATAGCTTGTCGTATAATGCAAACAGCCAAGAAAATGGGCATCAGGACTGTAGCCGTCTATAGTGATGCTGACCAGAATGCAAGACATGTTGAAATGGCCGACGAATCTTATCACATTGGCAAAGCTCCCTCAAGTGAAAGTTACCTGAAAATGGACAAAATAATAGAAGTCGCCAAGATGACCGGTGCACAAGCCATCCACCCAGGCTATGGATTCCTATCAGAAAATCCAGAGTTTGCTGAGCTTTGTGAAAGAGAAAATATTATATTTATTGGACCACCTCCGTCTGCTATCAGGGACATGGGTATTAAGAGTTATCCTGTGATGTTAAAAGCTGTAAGAGGAGGTGGTGGAAAGGGAATGAGGATTGTCCCAATAGCCAAGGATTTTGACAGCGCACTGGAATCTGCCAAAAATGAAGCTAGAAAGTCATTCAACAACGATGACATGCTTGTAGAAAAGTATGTCGAAACTCCAAGGCATGTTGAAGTGCAAGTTTTTGGAGACAAGCAGGGTAACACAGTTTATCTTTATGAGAGAGACTGTAGTGTACAACGCAGGCATCAGAAGATCATAGAAGAGGCTCCTGCCCCAGGGGTGTCCCCTGAGGTCAGAAAGAAGATTGGAGAAGCAGCAGTAAAAGCTGCAAAGGCTGTTGGGTATGTTGGTGCAGGTGATGAAGTGTCTATTTATTACGATCCAATGATAGCAAAGCTGGTTGTCTGGTCAGAAAACAGGTCATCTGCTCTTCATTTACTTAAAGAATCCCTCTTGCAGTATCATGATGGCTACCACTCTCTAGACAGACCAGTCCCCAAGTATTTGAGAGGGAGAGTTAGTGGCAGTACTGCAGGAGGTGCCAAAGCACCAATGCCTGGCAACATAGTAAAGATTCTTGTCAAACCTGGTCAGACTGTAGAAGAAGGTGATGTACTAATAGTGATGGAAGCTATGAAAATGGAGTATTCCATCAAGGCCCCAAAGGCAGGGAAGATAGAAAAGATTCTCTGCGAGTTGAATGGGACAGTTGATCGCAATGCACAACTGGTACAATTTGAGGAAGGACAGGAAGAAGAAATAGAAGAGGACGACGTCGACTGA

Transcript

Actinostola_03387

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00289	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan
PF00364	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF02785	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF02786	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000089	Domain	Biotin/lipoyl attachment	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001882	Binding_site	Biotin-binding site	Interproscan
IPR005479	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR005481	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR005482	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR011053	Homologous_superfamily	Single hybrid motif	Interproscan
IPR011054	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR011764	Domain	Biotin carboxylation domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR016185	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24098	OUTER SEGMENT 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan
GO:0030992	Cellular Component	intraciliary transport particle B	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-