Gene detail

Detailed information of Actinostola_03272 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_03272	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	scaffold269_size436052	266196	276014	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_03272

ATGGAAAACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAGGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGGGAAGACGGAAGACGGAAGACGGAAGACGGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGAAGACGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAACGGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGAAGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGAAGACGGTTCGAGTTAGCGGGGGTTCGAGTTAACGGGGTTAGTCATCTGAATGGCTCCCACCGTCATGTTATAGTCTCCACCGGTCTAGCGGAGCCGCGGACCATCGTAGTCTACCCCGCGAAAGGACTGCTCTACTGGACAGACTGGGCCTCCCCAGCGCGCATCGAAAGGTCTGCGATGGACGGGTCTTTCCGTCGTACCTTGGTGTCAGGATCGAGGATCAAAAGACCCTCTGGACTTACCATTGATTATGAACAAGACGTCGTATACTGGGTGGATTTGCGAAAGGATTCAGTGTGGAAAATGGACCTAGATGGCGACTTGATCAAGCCAGGTGGTCTTGCTGTCGACTGGGTAGAGAAGCATGTGTACTGGACCGATTCAATCTTGAATACTATCAATAGGATCAACTTCAATGGTTCGTCACTAAAGACTGTCGTAAAACACGGTCTGCAAGGACCAACATCTCTAGCGATCTTTCCTTGTGAAAAGATGATCTACTGGGTTGAGTGGGGACGATACCCAAGCATCAAGTCAGCGTGGTTAAATGGTATGGGTATACAAACAGTCATTAGTGGAAACCTGCAATGGCCCTTCGGGCTTTCTATCGATTACACTGAGGAGAAAATGTACTGGGCTGATGTAAACGTGATCGAATGTGCGTATCTTAACGGTTCGCATCGACAGCGATTGATCGCCACTGTCCAGCGTGCCTATGCTATAACAGTTCTAGGCGAGTTTGTGTATTGGACCGACTGGGCGCAATATGCCGTGATGAGAGCCAACAAGTACAATGGTGGGGATCCCATTAGCATGTCACGTGATGGCCTATCAGGACTACCCATGGATATACACGTGTTTGCAAAGGAGAGACAAGATTGTTACACTCTCATACAAGGCTACCGCTGTATCGTCCTCAATGCCAGTTGTCAATCTGCTGACTTTTATACTTGCACCAACGGCAGATGCATCCTGGAGTTCGCAGTATGTGACTCGACTGATGATTGTGGCGACGGCTCTGACGAGCTGGCGATAGTATGTGCCAAGAGGACGTGTAGTGCTAATCAGTTCAGGTGCACTCTGGGCCGCTGCATCAATGCACAATGGCGGTGTGACGATGAAAACGACTGTAGCGATGGAAGCGACGAAGAAGGCTGTGCGCCTAAGACTTGCGCTGGAAACCAGTTTCGCTGTTCAGACGGTCGTTGTATAAACGCGAACTGGAGATGTGATCACGACAATGACTGTGGTGATGGAAGCGACGAGGTGGGTTGTCCGACGAGGCAATGCGCGGGAAACGAGTTCCGATGTAAAAATGGCCGATGTAAGGCGTTCGAGGACAAGTGTGATGGTAACAACGATTGTGGTGACTTCAGTGACGAGGAAGGATGTAAGAATATCGTCTGCCCTGCAGATCGAATCAAGGTCAGTGACTAG

Transcript

Actinostola_03272

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR051221	Family	Low-density lipoprotein receptor-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006898	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0042562	Molecular Function	hormone binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-