Gene detail

Detailed information of Actinostola_02335 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_02335	INNER MEMBRANE TRANSPORTER YGJI-RELATED	scaffold1_size3179133	1161574	1188014	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_02335

ATGTATTCCCCTGTATTCCCCTGTATTCCCCTGTATTCCCCTGTATTCCCCTGTATTCCCATCCTTTTTGGACAAATGGACCCGCTCCCGGTGGCCATTACAACTTCCCTGGAGGGAGGAGTGATGTTCATTCTGAACCCGCTAAAAGAACGCTGTTCCTATGGATCTTTGGCTCGATTTCGTGCAGTCTCTCGCTTGATGAAAGCCAATGGAAATACTGTCATTGGAGCATCAGGAGATTATGCAGACTTTCAATATATGAAAGCTGTTCTTGAACAGAAAATTATTGACGATGCATGTCTTGATGATGGTCATGGTTATACACCTCAGTCAATCTTTTCCTGGCTGACCAGAGTCATGTATTTCAGGCGTACAAAGTTTAACCCTCTATGGAATCAAGTTATAGTTGGTGGCTTTTACAAGGGAGAGAGTTTCCTTGGTTATATAGACAAGATAGGGATTGCTTATCAATCTGATACAGTAGCAACTGGCTTTGGAGCTTACCTAGCACAACCCATGCTACGGGATGCTTTTGAGAAGAACCCCAACTTGACCCAGGAACAAGCCAGGAATGTCATCATTGAATGCTTGAAAGTTTTGTTTTATAGAGATGCACGATCACTGAATAAGTTTGAGATTGCTATTATCACCAAGGATGGGACTGTGATAGAAGAACCACAGTCTGCAGAAACTAACTGGGATATAGCTCCTATGGTCAATGGACTGATTGACGCTGGAATCTATGTTGTGATCGGACAGCTTGCGCTTACGTTAGCCGGGCCGGCGGTGATCATTTCATTCCTTATAGCAGCAGTAGCAGCTGTCTTTTCTGGTCTTTGCTACGCCGAGCTGTCGTCTAGGATTACAAAGACTGGATCTGCGTACGTCTTCACGTATGTCATCTTAGGGGAGGTCTGGGCGTTCGTTACTGGATGGAGCATGATTGCTGAATACATCGTCAATGCTGCGTCTATGGCTAGAGCGTTTTCTGGCTATATCAATTCACTGACTGGTGATGCAATGTTTGACCTGTTTAAAGAAAAACTCTGGTGGGGCAATGAGGGGCTGTTTGGACACTTCCCCAATTTCCCCGCCCTGGGTTTAGTCATTTTAGCAGCGATTATAGTCGGCCTTGGTGTGCGCGAGTCCAAGACTTTCATGGATGCAATGACTTCAATCAATGGCGCTGCCCTTGTGTCTGCAATAGTCGCTGGAGCTGTACTCTCCGATCCCAGCAACTGGTCTAGTATGGACAAGTTTGCGCCCAATGGAGTTTCTGGGATCCTAATGGCCGCGCCAAGTTGTTTTTACTGCTTATCTGGATTCGACGCAATACCGACTGCCAGCGAAGAGGCTTTGGACCCTCGTCATGATGTCCCTAAAGCTATCATGTGGTCCCTAGGAATATCATTAGTTGCCTATATTGCTGTTATAACCGTACAGACACTTATGGTACCGTATACAGACCTGACGTACTACGCGCCACTGGCAGAAGCATTCAAATCTCGAGGCTTTATACCAGGCTACTACATAGTATCCATCGGCGCCTTGTGCGCCATATTTGGAAGTCTTCTGGCTACGACCTATGCAGTGACGCGATTGTTCTACTCCCTGGCGTACGACGGGCTCATATCCACCTGCATCGCAAGGGTGGGGGAGAACCGTCACATCCCCACAATGTCCGTCGTCTGCACGGGTGTTCTGACTGGTATCTTGGCACTTTGCATCGAGATGAAGATGTTGGTCGAGTTGGTGTCGGTCTCGACAATCACTACATACACCATGGTGTCAGTGTGTGTCTTACTCTCCCGTTACCAGACAGACATCTCCAGCGTCTACCTTGATGGTTACCTTCACAGCTCATCGGTGACTGATTGGCTGCAGAACAAACTCTTCCCGGATAAAAAGACAAAATCCACATCCAGGGCTTGGGTGAACTACCAGAAGATATCCGAAAAGGATGAACCCATAAGCATTGGCAATCCTCCCAGCAAGCTCACTCATGACACGCAATTATCTGCTATGATTGCGCTTGTCTTCTTCATCTTGTGCTTGCTGGGTTTTTGGACATGTTTGGCTGGACTGGTAGCTTTGGTGGTTCTCTATAAACTGCCAAGGAATAATGCCAAGTTTCCCTTCATGGTGCCAATGGTTGTGCCTGTTCTGAGTAAGTAA

Transcript

Actinostola_02335

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00227	Proteasome	Proteasome subunit	Domain	Interproscan
PF13520	AA_permease_2	Amino acid permease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001353	Family	Proteasome, subunit alpha/beta	Interproscan
IPR002293	Family	Amino acid/polyamine transporter I	Interproscan
IPR016295	Family	Proteasome subunit beta 4	Interproscan
IPR029055	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43243	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005839	Cellular Component	proteasome core complex	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006865	Biological Process	amino acid transport	Interproscan
GO:0015171	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0051603	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-