Gene detail

Detailed information of Actinostola_02319 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_02319	NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED	scaffold19_size1160681	849892	860235	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_02319

ATGGCGCCAGGAAATCTTTCTAAGACGCCACCATCCAGCCCTACTTGCAGCCCGCCACGAAAAAAAGCCAAATTCTCGCTGCGTTTGAAGGGGAAAAGCAAATCCAAGACTGACAACGATGACAAAAACAGCAAGGCATCAAACATTTATGCAATGTTTCACTCACCAGTCCAGGAAACTGAGAGCAGTTCAAATGATATTGTGGCTGAACCTGTTCTGCCATCTATTCCACTTGCTGGTTTGATAAACAGAGCAAACACTTGCTACGCGAATGCAGTTTTACAGGTTTTGCGCTGCTGTCCTGGGTTTCAGCAGTTTTTAGATCACCTTGCTAAGGATATCAAGATGATAGAAGATGCAACTGAGAACAACAAGGACATGAATATTGAACCAAAACAGCTTGTTACTCATCTGAGCAAGCTGCTTGGTCAAATGTATTCCTATGAAGTAGATTTCTTAAATGACAAGAAAAACTGTAATCATTTGAGGAACAAAGGACCCATGAACCTTGTTTTGGCTGCAGAACCACATGACTTCATGGCAGCTTTTAGAGAACTGTATCCAGCGTTTGAATGCAACCTTCAACATGATGCACAAGAATTCCTTTGCTCTCTCATAATGGCTCTTCAGGAATCTGATGCTTCTGTTATCAAGAAACTTTTCCAGGGCAAACTTGTACATCAAACAAAATGTCTTAACTGCGAACAGGCCAAACTAAGACTGTCATCTAAGATTACCAGTAATCTACAGACTCCATTTACTCTATCTGTACAAGAATGGTGCTCAAAGAAATGCCAGTTGGAAAACAATGTTTATGAGTTGTTTGGCATTGTGTTACACAGTGGAATGACGTCAGGGAGTGGTCATTACGAGACCTATGTAAGGGTTCCTCAAACCAACCAACAGAAGCAAAATAGTGACATCTTGAATAACGGCAATGGTGCACCAAACTTGAATCCAGCAAATGAAATCACAAATGGATTACCTCGTCATGGAGAGAATGCTACTGACCACATGCAGAATGGGATAGCGAACAACGACATTAAAGTTGACATCAACAGAAATTCTGTTGGAAAAACAGAAGGAAATATGTCTGACAGTAATGTTTCTAAACGAATTACAAATAAAAAGCTGAGAACTAGAAAAGCAAAGAAATCTATCAGTGAGCTGTCAGTTGATGAGTCTGGGAGTAGTTTGGAGAGAAATGATGAAGAAGGAAAAACACAGGAATCTCAAGATTGTGCAGAAGATGACCCGAGTCCATTTCAAGCTCAAGGAAAAGGTCAAGCATCCTGTATGTCTTTGATAACTAAGTATTTTCACAGATCAAAAAAGGTATCATCAAATAGCTCTAACAATGAAAAATGCACTGAACAAAGTGAGGAGTGCACTCGCAATGCCAATATGTCAAATGGTAACACTGACAACAACTCTGTTAGTAAAGAACTATGTGAGGCAACTGATGATGAACTTAAAGAAGCTTCAAATCCAAAGGTTTGCAGAACCATTGAAGACTCTTTCAAAAAAATCAACTCCATGAAGCAATCACCCGAGTCTTCAAAATCACCAACTACATGTATCCGCAAACTTCATTTCATGAATGGATCAGATGACAAGATGGATAAAAGTGAATCTGCTTCTCATGAAAACATAGAGAACCTGGATCAACCACTGGATGAATGCTGTGACTGCAAAACAGCTGATGACTTTCTCCAGCTTGTGAAAAGAAACAATCCAGGAGAGAATGAATTCCACCAAGCTGTCGAGGAGGTTGTGTATTCAATCTGGGACTACCTCAAGGCTCACCCTGAATACCTCAAGGATGGAATCCTGGAGCGACTTGTAGAACCTGAGAGGGTGATAATGTTTCGAGTGCCATGGAGGGATGACAAAGGCAAGGTCCATATCAACAAAGGTTATCGAGTGCAGTTCAGCTCTGCCATTGGTCCATACAAGGGTGGTCTTCGTTTTCATCCAACTGTCAACCTGAGCATCCTAAAGTTTCTTGGCTTTGAACAGGTGCTTAAAAACAGCTTGACCACACTGTCAATGGGTGGGGGAAAAGGAGGCTCCAACTTTGATCCCAAAGGAAAGACTGACGCAGAGGTGATGAGTTTCTGCCAATCCTTCATGACTGAGCTTCAGCGCCATATTGGACCCAATACTGATGTACCTGCAGGGGATATTGGGGTTGGTGGTCGAGAAATTGGATTCCTGTTTGGTCAGTATAAGAGGCTCCGCAATGAGTTTACTGGGGTACTGACAGGAAAGGGGATGTCTTTTGGTGGTAGTGTAATACGTCCAGAGGCCACTGGTTATGGGCTGCTGTACTTTGTAGATGAGATGCTCAAAGCAAATGGTAAGAGTCTCAAGGATAAGATCATCACTATCTCTGGGGCTGGTAATGTGGCTCAGTATGCAACAGAGAAAGCCATACAACTGGGCGGCAAAGTGGTCTCATTGTCAGACTCCAATGGGACAGTCTATGATCCTAATGGTATTGATTCACAGAAATTAGCTTTTGTGATGGAGCTGAAGAATGTCAAGCGTGGTCGCATCCAGGAATATGCAGAAAAGTACAAAGTTGAGTACCATGAGGGGAAAAGGCCATGGTTCATCAAATGTGATGTGGCATTGCCATGTGCAACCCAGAATGAAGTGAGCAAAGAAGATGCTGAAATGCTGGTCAAAAATGGCTGCAGTGTGGTTGCAGAGGGAGCCAACATGCCAACATCTCCTGAAGCCATTAAAGTGTTCCATGCAAGAAAAGTCCTGTTTGCTCCTGGCAAGGCTTCAAATGCTGGAGGTGTTGCTGTGTCAGGTCTGGAGATGAGCCAAAACAGCGAGCGTCAAAGCTGGACCTCAGAGCAAGTGGACCAGAAACTTAGAGGAATCATGAAAGCCATCCATGGCACATGCTTGAAGTATGGATCAGCTGGTGATGGCTATGTTGACTACGTAAAGGGTGCTAACATTGGTGGGTTTGTTAAGATTGCCAATGCTATGGCTGCACAGGGCATTGTGTAA

Transcript

Actinostola_02319

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00208	ELFV_dehydrog	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase	Domain	Interproscan
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF02812	ELFV_dehydrog_N	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR006095	Family	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase	Interproscan
IPR006096	Domain	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, C-terminal	Interproscan
IPR006097	Domain	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, dimerisation domain	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR033524	Active_site	Leu/Phe/Val dehydrogenases active site	Interproscan
IPR033922	Domain	NAD(P) binding domain of glutamate dehydrogenase	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR046346	Homologous_superfamily	Aminoacid dehydrogenase-like, N-terminal domain superfamily	Interproscan
IPR050724	Family	Glutamate/Leucine/Phenylalanine/Valine dehydrogenases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43571	NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004354	Molecular Function	glutamate dehydrogenase (NADP+) activity	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006520	Biological Process	amino acid metabolic process	Interproscan
GO:0006537	Biological Process	glutamate biosynthetic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0016639	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-