Gene detail

Detailed information of Actinostola_01933 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_01933	GLYCOSYL HYDROLASE	scaffold175_size520768	147925	173589	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_01933

ATGAATCAAAAAGAAGGCAGCTTCCTATACGACACATTCCCAGATGATTTCATTTGGGGAGCAGCTACGGCAGCGTATCAGATCGAAGGCGCGTGGAATGAAGACGGTAAAGGCGCGAGTACTTGGGATACATTCACCCATCAACCAGGCAATGTACACAACAACGAGAACGGTGACATAGCGTGCGATAGCTACCACAAGATTGACGACGACGTGGCTCTCTTGAAAAACCTTGGTGTTAGTCATTACCGATTCTCGATTTCATGGTCTCGAGTTCTACCTCGAGGTGATATAGACCAGGTCAATCCACTGGGTTTGCAGTATTACAAGAAACTTATCAAGAAACTTGTAGAAAACAATATCCAACCCGCTGTAACTCTGTATCACTTCGACTTGCCGCAAGCCCTGCAGGATACAGGAGGCTGGTTGAACGCAGAGATTGCTAACAAGTTTGGAGACTATGCTAGGCTTTGTTTTCAGGAGTTTGGCAATCATGTTAAGTTGTGGTTCACGATTAATGAGCCGCACGAAGAAGCTCTGTGTGCGTATGGATACGGAACGTTTCCACCAGGGCTTAAAGACATGGCTCAAGGCCCTTATCAAGCTGGTCATAACATGCTATTGGCTCATGCTAAGGCCTGGCACATCTACGACAAGGAATTCCGTGCAAGTCAGGGAGGTAAAATAACTATAGTATTGAACTCCCAGTATTTTGACCCTAAGACTGAAAGTGAGGCTGATATCCAAGCATCATATCGAGGCATACAGTGGTATTTGGGCTGGATGGCTCATCCTGTGTTCAAAGGAGACTATCCAGAAATAATGAAGAAAAGTATTGGGGGAAAAAGTTGTGCAAAAGGTCTGCGATGCAGCTACTGCCTTCTGGGAAGGCGTGGCTACTATGCCATCGAGTGTGTAAGTAAGTACCGGTACATGTATGTCCAATACGCGACGATCACAGCCCCACTACGCACTCTCACCCGACAAGATGTCCCTTGGAAGTGGGGAAAAGAACAACAACAGTCCTTCAACAAGCTCAAAGCCCTTACCGCAGACAAAGTCATGGCCTACTTCGATCCAACTCGGGATACAGAGGTCCTTGTCGACGCAAGTCCAGTTGGACTCGGAGCACTATTGGTCCAGGATGGCAAAATCATCAGCTACATGTACGCAAGTCGAGCACTGAGTGATGTCGAGTGCAGATACTCCCAGACTGAAAGGGAAACGTTGGCTGTGGTGTGGTCCACAGAACACTTTCATCTCTACTTGTACGGATCAAAGTTCAAGGTTCTAACGGATCACAAGCCACTTCTCGCCATCTTCAATAGTCACAAGCCAACATCCGCTCGCATCGACAGATGGAAACTTAGATTGATGCCCTATGACTATCAACTCATCTACCGACCTGGAAAGGACGATGACAACCCAGCTGACTTCATGAGCCGACATCCAAACACACCAGATCAAGTCGAGCGCAGCATCGCAGAAGAGTATGTTAACTATGTCTGCAACAACGCGGTGCCAAAGGCTATGACACTTCAGGAAATAAAAGTTCAGACCAAGAACGATCCAGAGCTCCAAACTCTGATCACAGCCATAATGACTGACAGCTGGACAGATGCAAACATACAGGAATTCAAGAAAGTCAGAGATGAACTCGCAGTGTATAGCGGAATGGTACTGAGAGGTAATCAAATTGTCGTCCCGATGTCACTTAGAGACAAAGCTGTAGAGCTTGCACACGTCGGTCATCAGGGGATAGTGAAAACAAAGCGTCTGATCCGGGAGAAAGTCTGGTTCCCTGGAATAGACCAAATGGTGAAAGAGAAAGTTGACAATTGCCTGGCATGCCAAGCCGCAACAACCCAAGGTACATGTAATCAATCATGCCCAGAGCCGCTCAAAATGATGCAACTAACACGTGGTCGATGGAAAGAAGTAGCGATTGACTTCACAGGACCATTCCCATCAGGAGATTACTTGCTAGTAGTAATTGACGAGTACAGCCGTTTTCCGGAAGTGGAGATAGTCACCTCCACATCTGCTAGAGCAGTCATACCAAAGTTGAACGCAATATTTTCCAGACAAGGGATACCTGATGTCCTGAAGAGTGACAATGGACCTCCCTTCAATGGACACGAATTCAGTAACTTCGCAGAACACCTAGGTTTCCACCACAGAAAGATAACCCCTGTATGGCCCAAGGCGAACGGTGAAGCAGAACGCTTCATGAGAAGTTTGAAGAAGTGTGTAACAACCGCCCATACAGAGCACAAAAATTGA

Transcript

Actinostola_01933

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00232	Glyco_hydro_1	Glycosyl hydrolase family 1	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001360	Family	Glycoside hydrolase family 1	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR033132	Conserved_site	Glycosyl hydrolases family 1, N-terminal conserved site	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10353	GLYCOSYL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008422	Molecular Function	beta-glucosidase activity	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-