Gene detail

Detailed information of Actinostola_01539 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_01539	CDC68 RELATED	scaffold155_size548342	21141	83450	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_01539

ATGAATGCATTGTGGGACATTTTGGATGCTTATCTACACCAGTTCTACACCCAGGGGGTATGTAAGAAGAAGATTGACTTTCTAAAGCCACTCCAGGACGCACAGAAGAAACATGAAGGCACGCCATCCATTGAACTACATCTCAGAAACAAGACCGACCAAGATAAAGCCAACTTTGAAACTCTGATAGAAGCAATAAAGAAAGATGGAGAAGGTAAAGCAGTTGGTTTGTTCATCAAAGATAATTTCCAAGGTCAGTTTATGGAGGGATGGAAGGAGGCTTTTGAGGCTGAATCATTTGAAAAGATAGACATCAGTAATGCCATTGCGTATGTCATGTCTGTAAGAGAAGACTCGGAGTTGGTCAACGTAAAGAAAGCAGCTCAAGTTTCATCCGATATTTTTGCCAAGTATTTCAAGAACCAGATCATGGAAATTGTTGACGAAGAAAAGCGAGTTAAGCATTCTAAGATTGCAGATGGCATCGAGTCTGCATTGGAGACTAAGAAGTACTTACAACCTGGCATGGATCCAGAGCAGGAACAACAAGAAAACTATACCTTCCTTCTTGCTGTCTTGGATTTGATTGTTGACAAGTTACGGCATGGCACAAAGCTGTGCGATGTCTACAAAGCCGTCATGGAACACATCACCCAAAATAAACCTGAACTTCAAAACAACTTCGTCAAGAATATAGGCTTTGTTATGGGTATAGAGTTCAGAGAAGGATCTTTGCTGATCACACCTAAGAATAACCATACTGCAAAGAAAGGAATGGTGTTCAACATCAGTGCTGGTTTTTCTGGATTAGTTAATGACAAAGCACAGAATGAGCAAAACAAGAATTATGCTTTGTTTGTTGGTGATACTGTCTTGATCAATGAGGATGAAAATGATGATGATGACGACAAACAAGAAAACGGAGAGGGGGAGGAAGATCTACTGATAGCAGGAGAAGGCAAAGGGACATTATTGAAAGGGAGAACAAGGCAGACTGAGTTAACAGCTGAAGACAAACGAAGAGCACATCAACAAGAACTATCAGAGCAGCTTCATGAGGAAGCAAGACGCCGTCTTCTTGAAGATAAAGGTGAAGTTAACAAACCAACAAAGATAAAGCCATCCAATGTCGCCTATAAGAACTCTCTGTTACTACCAAAGGAACATGTCATCAGGGATCTGCGTCTGTTTGTTGACAAGAAACACGAGGCTATCATTCTCCCTCTGTTTGGAATTGCAACACCTTTCCACATCTCCACTATCAAGGGTGTTGTACAACAAGGCACTCTCAACCTTAACAATGCCAAAGGGAACCCCAAACTGAAGGACCTTTACATCCGACCGAGCATAACTCAACGAAGGACACCATTTACTACAATTTATTCTGATAACTCAATGGATAAAGTCCTACGTCCCGAACGCCTGGAAACGGATCCAAACAGCGTTGGAGCTTCGAAAGAATGGATCCACTGGAAGCGAACCTTCGAAAACTTCCTCTCAGTATTAAGCGACAAAGACGTCAACAAATTCGGTGTATTAATCAACTTTATCTCACCCTCGATCTTTCAATACGTCGAAGAGTGTACGACCTATGAATATGCCATCGAAGTTCTGCAAAATATCTACGTGAAGCCACGGAATGAGATCTACGCTCGATACATACTCGCCACTCGACGACAGCAATCCAACGAGACTCTCGACGAGTATCTACAAGCTCTTAAGTCCTTGAGCAAAGACTGTAACTTCAAGTCTGTCACGGCTGTTAAATACTGCGAGGAAGGTGTTAGAGATGCCTTCATTACGGGACTTCAATCGAACCAAATTCGACAAAGGTTACTGGAAAACAAGACACTTGACTTAAAAACAATGTTTGACCAGGCTCGTGCTCTAGAGTCTGCTATGCGTACTTCTGAATCCTACATGGCCCCTCAGCCCTCCTTCAACGCTGCAGTCCCTCCTACTCCACCTGACCCGGTCCAACTTGACCACAACACCCTGGCCGCTGCTCAACATGAAGAACAAACATGTTTCTTCTGTGGTAACACCAAGCATCCTCGTTCTAAATGCCCAGCTCGTGATGCCACCTGTAACAAATGTCAAAAAAAAGGGCACTTTGCGAAAGCATGCCGTGGAAAGTCAAGCAAACCCAAAGAGGGATTTTCAGCTGCAATCTGGTCCCCAACACTCGCCACCACAGGGACCCCAGAATCCCTCAAGAAGTCATCAGCTACGGTAGAAATTAACGCGGGATGGAAAGTCAAGGCTCTCTTCGACAGTGGAAGTAGTGAAAGTTTCATCCACCCTAGCCTGGTGGAAGCAGCAGCTATAACCATTCATCCGTCCTCCAGTACTGTCTCCATGGCGACGTCAGCATTTTCTACAAAAGTGACAGGGTGCTGCATTGTTGACCTCGCCTATCAAGGAAGGTCGCAGCACGAAAGTGTTACTTTCAATTATGATTGTCATCCTATCATCACTAAGTCAAGACGTTACAGTCAAGAAGATCTGGCCTTCATCAATGGAGAAGTGGAGAGGCTACTCAAAGAAGGCATCATAGAGCCGAGTCAATCTCCATGGCGAGCTCAAGTTGTAGTGACTAAAGACGAAAACCACAAGAAACGACTGGCCATAGACTACTCCCAGACTATCAACCGATTTACACTACTAGATGCCTTCCCATTACCCAGAATCAATGACACTATCAACGACATTGCTCAGTACCGAGTCTTCAGCACCGTCGACCTGAAGAGCGCATACCACCAAGTGTCCCTCAAAGACGAAGACAGACCATATACCGCTTTCGAAGCTCGAAATGGCCTCTTCCAGTTTACACGTCTTCCTTTTGGTGTGACTAATGGAGTGGCGTGCTTCCAAAGGGAGATGATGAAACTTGTGCAAGAAGAAGATCTTAAAGCGGTATTCCCTTACCTGGACAACATCACCATCTGTGGTAAAAACCAAGAAGACCATGACAAAAACCTGACATGTTTTCTTGAAGCCGCTAAACAAAAGAACATAACATACAATGATGATAAGAGCATCTTTTCAACCCGGCGCCTTCCGATCCTGGGATATGTCATCGAAGAAGGAACCATCTGCCCGGATCCTGAACGGCTACGACCGCTGCGTGAGCTTCCTGTTCCACATGACACCAAGGCCCTCAATAGATGCCTGGGGTTATTCTCTTACTATTCACGATGGATCCCGGCATACTCTGACCGCATCAAGCCAATCACCAGCGCAAAGTCATTCCCTTTACCTCAAGAGGCTGTAAAGGCATTTCAAGGGATCAAGAAGATAATAGAGGAAGCAGTTGTTACAGCAATTGACGAGAATACACCATTTGAAGTGGAGACTGATGCCTCAGATGTAGCGTTGGCAGCTACTCTCAACCAAAAGGGAAGACCTGTTGCCTTCTTCTCAAGGACTCTGCAAGGGAGTGAGCTGAAACATGCGTCAATTGAGAAGGAAGCCCAGGCGATTGTCGAGGCATTGAGACACTGGAAACATTTCCTGACTGGAAGACATTTCACTCTTACGACTGACCAAAAGTCTGTATCCTACATGTTCGACCAGCGCCACAAAGGCAAAATCAAGAATGACAAGATTATGCGTTGGAGGATTGAGCTCTCTTGTTACAGTTTCGACATTGTATATCGACCGGGAAAGGACAATATCCCACCGGACACTCTATCACGCGCCACTTGTGCTGCAGCTACACAAGATTCCCTCTACAAGCTTCACCAGTCACTCTGCCATCCAGGCATAACAAGACTTTGGCATTTCATACGAGCCAAAAACCTCCCATATTCACTTGAGGAAGTCAGGCAGATGACGAATTCGTGCCCTGTTTGTTGTGAGTGTAAACCTAAGTTCCACCATCCCGAGGAAACTCATCTCATCAAAGCTACTCAACCATTTGAAAGGATCAACATCGACTTCAAAGGCCCGTTGCCATCAACTAACAAGAACAGATACTTCCTCAATATAATTGATGAATTCTCCAGATTTCCATTTGTATTCCCATGTCCTGATGTTTCCACAACGACAGTAATCAAGTGTCTCACCACACTCTTCTCTCTCTTCGGGATGCCAGCGTACGTTCACTCAGACCGAGGGGCGTCTTTCATGAGCCATGAGTTACGAGCCTTCCTCACTGAAAAAGGGGTTGCGATGAGCCGTACCACTAGCTACAATCCGGCTGGCAATGGTCAAGTTGAGAAGTATAATGGTACCATCTGGAAAGCGATTACAATGAGTCTTAAATCCAATAACCTTCCAATAGAGCATTGGCAGGATGTCCTCCCAGACGTGTTGCACTCAGTCCGTTCACTCTTATGCACCGCAACAAACGAGACACCTCACGAACGTTTCCTTGGGTTCTCACGTCGGTCTTCGGCTGGCAGTTCTGTTCCTACATGGCTAGCTACTCCTGGTCCGATCTATGTCAAGCGTAATGTCCGGAATAGCAAGACTGACCCTTTGGTGGACGAAGCTGAGTTGCTTCAAGCGAACCCCCACTATGCACATGTGCGCTACCCAGATGGTAGGGAGACTACTGTGTCTACCAAGAGCCTTGCTCCTAGAGGTCAATCAAAGGAACCACAAACTCTACCTCAGCCCAGAATGGAAAAGAAGAAGAACAACAGCAGCAACAACAATAACAACAACAACAGCAACAACGACAACAACAATAGCAGCAGCAACAACAACAACAGTAACAACAACAACAGCAGCAGCAACAACAATAGCAGAAGCAACATCAGCAGCAACAATAACAACAGCAGCAACAACAGCAGCAATAGCGACAACAACAACAACAATAACAGCAGCAACAACAACAGCAGCAACAACAGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAGCAACAACAACAGCAATAGCGACAACAACAATAACAGCAGCAGCAACAACAGCAGCAACAACAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAGCAACAACAACAGCAATAACAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAATAACAGCAGCAGCAACAACAACAGCAGAAACAACAACAGCAGCAACAACAACAATAACAGCAGCAGCAACAACAACAGCAGAAACAACAACAGCAGCAGCAACAACAATAACAACGACAACAACAGCAGAAACAACAACAGCAACAACAACAGCAGAAACAACAACAACAACAACAATAGCAACAGGGGATTCAGGTTTTCAACGTTCCGTGGCGAGCATATCGATATCTTGTATGGTAACGTCAAACACTCGTACTTTCAGCCTTGTGACGGTGAGATGATTATCCTGATTCACTTCCACCTCAAGCATCCCATCATCATCGGCAAAAAGAAGTACAGAGACATCCAGTTCTACACAGAAGTTGGTGAGATAACGACAGATCTTGGCAAACATCAACACATGCACGATAGAGATGACTTGCAAGCTGAGCAGAAGAAGAAGAACAACAGCAGCAACAACAATAACAACAACAACAGCAACAACGACAACAACAATAGCAGCAGCAACAACAACAACAGTAACAACAACAACAGCAGCAGCAACAACAATAGCAGAAGCAACATCAGCAGCAACAATAACAACAGCAGCAACAACAGCAGCAATAGCGACAACAACAATAACAGCAGCAACAACAACAGCAGCAACAACAGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAGCAACAACAACAGCAATAGCGACAACAACAATAACAGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAACAACAGCAGCAGCAGCAACAACAACAGCAATAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAACAATAACAGCAGCAGCAACAACAACAGCAGAAACAACAACAGCAGCAACAACAACAATAACAGCAGCAGCAACAACAACAGCAGAAACAACAACAGCAGCAGCAACAACAATAACAACGACAACAACAGCAGAAACAACAACAGCAACAACAACAGCAGAAACAACAACAACAACAACAATAGCAACAGGGGATTCAGGTTTTCAACGTTCCGTGGCGAGCATATCGATATCTTGTATGGTAACGTCAAACACTCGTACTTTCAGCCTTGTGACGGTGAGATGATTATCCTGATTCACTTCCACCTCAAGCATCCCATCATCATCGGCAAAAAGAAGTACAGAGACATCCAGTTCTACACAGAAGTTGGTGAGATAACGACAGATCTTGGCAAACATCAACACATGCACGATAGAGATGACTTGCAAGCTGAGCAGGCCGAGAGAGAAATGAGACAACGATTAAAAGCCGTCTTCAAAAACTTCATCGACAAAGTAGAAGGTTTAACTCACGGTCAGATCGAGTTTGACGTACCATTCAGAGAGCTTGGTTCATGCGATATCAAGTACACTGAAGGTATTCAGAGTTTGAATTGGGCTAAAATCATGAAGACAATCAACGACAATCCTGAGGAATTCCTTGAGAATGGTGGATGGAGTTTTCTCGATCCGCAGAGTGACAATGAAGACCGTGGCAGCGACGACGACACTGCAAGCGAGTATGCACCAACAGAGTCTGGCGACAACGCGTCTGAAGAAGAAGAAATTTTCTCGTCTGAAACAGAGACGTCGGAGTCAGGATCAGATTTTGAGGAGGAACTTGGCAGCGAAGAAGAAAGTGGGAAAGATTGGTCAGAGTTAGAGGAAGAAGCTATTGAAGAACAGGCAACGCGAGACTATGGAAACGTCTACAATCGAAAGATCTCAGAGAACAAAGATGAGCAAGCAGCAATTTGGACGAGTATGTACGAGAAAAACCTTGGACGTAAGAGCCTGCGTTACTTTCGACCAGCGTTCTCGTCGCTGGCCGAAAGTAACGCAGGCTCTGGGGACGAGATTGCCAACTGCCCAGCTAACTTGCGCATGCGCTCTAAAACCGGAAGAACAAGAAATCCTGTTCCCAAAAAATGGATTAGAGCCTACGTTCTCGTCGCTGGCCGAAATCAGTCAGTCAGTCCATCCGTCAGTCAGTCAGTCAGTCAGTCCATCCGTCAGTCAGTCAGTCAGTCTATCCGTCAGTCAGTCAGTCAGTCCATCCGTCAGTCATTAGTCAGTCAGTCCATCCGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCCGTCAGTTCATATAATCAAGTCACCTCAGGTTCCTGTCAAGCTGCGCACATTTGTCCACGACTACTGCGCATTAGCAAAGACAAGACTCATGGATTTAAAGCAACAAGGGCAAGCCATCAAAGAGGTTGACAAAGTGTTAGATTCCTATCAGAAGACAGGGAAAGTACCAGGAAGTGTCATGGAAGCAAGATCACTGATGCTCTATTGA

Transcript

Actinostola_01539

Protein

Actinostola_01539

MNALWDILDAYLHQFYTQGVCKKKIDFLKPLQDAQKKHEGTPSIELHLRNKTDQDKANFETLIEAIKKDGEGKAVGLFIKDNFQGQFMEGWKEAFEAESFEKIDISNAIAYVMSVREDSELVNVKKAAQVSSDIFAKYFKNQIMEIVDEEKRVKHSKIADGIESALETKKYLQPGMDPEQEQQENYTFLLAVLDLIVDKLRHGTKLCDVYKAVMEHITQNKPELQNNFVKNIGFVMGIEFREGSLLITPKNNHTAKKGMVFNISAGFSGLVNDKAQNEQNKNYALFVGDTVLINEDENDDDDDKQENGEGEEDLLIAGEGKGTLLKGRTRQTELTAEDKRRAHQQELSEQLHEEARRRLLEDKGEVNKPTKIKPSNVAYKNSLLLPKEHVIRDLRLFVDKKHEAIILPLFGIATPFHISTIKGVVQQGTLNLNNAKGNPKLKDLYIRPSITQRRTPFTTIYSDNSMDKVLRPERLETDPNSVGASKEWIHWKRTFENFLSVLSDKDVNKFGVLINFISPSIFQYVEECTTYEYAIEVLQNIYVKPRNEIYARYILATRRQQSNETLDEYLQALKSLSKDCNFKSVTAVKYCEEGVRDAFITGLQSNQIRQRLLENKTLDLKTMFDQARALESAMRTSESYMAPQPSFNAAVPPTPPDPVQLDHNTLAAAQHEEQTCFFCGNTKHPRSKCPARDATCNKCQKKGHFAKACRGKSSKPKEGFSAAIWSPTLATTGTPESLKKSSATVEINAGWKVKALFDSGSSESFIHPSLVEAAAITIHPSSSTVSMATSAFSTKVTGCCIVDLAYQGRSQHESVTFNYDCHPIITKSRRYSQEDLAFINGEVERLLKEGIIEPSQSPWRAQVVVTKDENHKKRLAIDYSQTINRFTLLDAFPLPRINDTINDIAQYRVFSTVDLKSAYHQVSLKDEDRPYTAFEARNGLFQFTRLPFGVTNGVACFQREMMKLVQEEDLKAVFPYLDNITICGKNQEDHDKNLTCFLEAAKQKNITYNDDKSIFSTRRLPILGYVIEEGTICPDPERLRPLRELPVPHDTKALNRCLGLFSYYSRWIPAYSDRIKPITSAKSFPLPQEAVKAFQGIKKIIEEAVVTAIDENTPFEVETDASDVALAATLNQKGRPVAFFSRTLQGSELKHASIEKEAQAIVEALRHWKHFLTGRHFTLTTDQKSVSYMFDQRHKGKIKNDKIMRWRIELSCYSFDIVYRPGKDNIPPDTLSRATCAAATQDSLYKLHQSLCHPGITRLWHFIRAKNLPYSLEEVRQMTNSCPVCCECKPKFHHPEETHLIKATQPFERINIDFKGPLPSTNKNRYFLNIIDEFSRFPFVFPCPDVSTTTVIKCLTTLFSLFGMPAYVHSDRGASFMSHELRAFLTEKGVAMSRTTSYNPAGNGQVEKYNGTIWKAITMSLKSNNLPIEHWQDVLPDVLHSVRSLLCTATNETPHERFLGFSRRSSAGSSVPTWLATPGPIYVKRNVRNSKTDPLVDEAELLQANPHYAHVRYPDGRETTVSTKSLAPRGQSKEPQTLPQPRMEKKKNNSSNNNNNNNSNNDNNNSSSNNNNSNNNNSSSNNNSRSNISSNNNNSSNNSSNSDNNNNNNSSNNNSSNNSSSNNSSNNSSSSNNNSNSDNNNNSSSNNSSNNSSNNSSNNSSSSNNNSNNSSSNSSSSSNNNNSSSNNNSRNNNSSNNNNNSSSNNNSRNNNSSSNNNNNDNNSRNNNSNNNSRNNNNNNNSNRGFRFSTFRGEHIDILYGNVKHSYFQPCDGEMIILIHFHLKHPIIIGKKKYRDIQFYTEVGEITTDLGKHQHMHDRDDLQAEQKKKNNSSNNNNNNNSNNDNNNSSSNNNNSNNNNSSSNNNSRSNISSNNNNSSNNSSNSDNNNNSSNNNSSNNSSSNNSSNNSSSSNNNSNSDNNNNSSSNNSSNNSSSNNSSSSNNNSNNSSSNSSSSSSNNNNSSSNNNSRNNNSSNNNNNSSSNNNSRNNNSSSNNNNNDNNSRNNNSNNNSRNNNNNNNSNRGFRFSTFRGEHIDILYGNVKHSYFQPCDGEMIILIHFHLKHPIIIGKKKYRDIQFYTEVGEITTDLGKHQHMHDRDDLQAEQAEREMRQRLKAVFKNFIDKVEGLTHGQIEFDVPFRELGSCDIKYTEGIQSLNWAKIMKTINDNPEEFLENGGWSFLDPQSDNEDRGSDDDTASEYAPTESGDNASEEEEIFSSETETSESGSDFEEELGSEEESGKDWSELEEEAIEEQATRDYGNVYNRKISENKDEQAAIWTSMYEKNLGRKSLRYFRPAFSSLAESNAGSGDEIANCPANLRMRSKTGRTRNPVPKKWIRAYVLVAGRNQSVSPSVSQSVSQSIRQSVSQSIRQSVSQSIRQSLVSQSIRQSVSQSVSQSVSQSVSQSVSPSVHIIKSPQVPVKLRTFVHDYCALAKTRLMDLKQQGQAIKEVDKVLDSYQKTGKVPGSVMEARSLMLY

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00557	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF08644	SPT16	FACT complex subunit (SPT16/CDC68)	Domain	Interproscan
PF14826	FACT-Spt16_Nlob	FACT complex subunit SPT16 N-terminal lobe domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF21091	SPT16_C	FACT complex subunit SPT16, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000994	Domain	Peptidase M24	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013953	Domain	FACT complex subunit Spt16 domain	Interproscan
IPR029148	Domain	FACT complex subunit Spt16, N-terminal lobe domain	Interproscan
IPR029149	Homologous_superfamily	Creatinase/Aminopeptidase P/Spt16, N-terminal	Interproscan
IPR036005	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR040258	Family	FACT complex subunit Spt16	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR048969	Domain	FACT complex subunit SPT16, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13980	CDC68 RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0035101	Cellular Component	FACT complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-