Gene detail

Detailed information of Actinostola_00562 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_00562	DUF3504 DOMAIN-CONTAINING PROTEIN	scaffold114_size618056	352905	374223	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_00562

ATGAAGGTAATGGCAAACCTTGTTCTAGACAAGACAACAGGAGAACTTATTGGCTTTACAGACCTTGGAGATCCAGAACTGAACTTTGGAGCGCTAGAGAAGGTTGACATGATTGCTTCACATGCACTAGCATTCATTGTCAGAGGAATGTGCACTGAGCTTAAGTTTGCTCTGGCCCACTTTGCTACTACTGGTATCACTTCAGTTATGCGGGTCAACCTTGCTGCACAAGTCTTAAGTGCTTCAGTAGCATCCGTGATGAAGGCATTTGGGCCTCCAGATGCAGCAGCTACTGCAAAACTTTGCGAAATGGTAGATAACGTCTTTGATTGTCTCAATGTTCGAAGCACTAAAGAACACGAGAGGAAGCGCAAGCCATTCCTTGCTCCCTATAGATCTGTTGATGATAGAAGGTTCCAGTTCTTAATGGAATTTTTGGATTATCTAAATCAGTGGAAAGAAAGCACCAACACCAGGCAAGGAAACTTCACCAAGAATGCCAGAGCACGTATGTTTCTCTCCTGGCAGACACATGAAGGCTACAGAATAACAATCAAGTCTGTTACTGAGGCCACACAATTCCTTCTGCAAGAAGGAATGGAGTTTGTTCTAACTGAGCGTTTCTGCCAAGACCCAGTCGAAGAGTACTTTGGGAAGCAACGCAAAATTGGAAGGCGAAGTGACAATCCAGACATTCACAGGTTTGGCTACAACAACAACACTATCAGAATACAGAGTCCCCTGCTGGATTTGGAAGTGGCTAATTACGCCACATCGTTGGCGTCTTTGCCGGCAAATTTGAAGTTGCGAAGTGAAGTGTTTGAAACAAAAAACTACAACAACAAAAAAATAATACAGATAAAGAAAAAAAGAATGGAAGAGATTCCAGACTACAGTATTGACTGGTTTCCAGAGGAAAATGAAAATTTGGAGGAGCCACCGCCGAAAAAAGCAACTCGATTTGCTGTTTTGCAGGAGAGCGATTTAGACCATCTTATTGACGGCGCTCAAGCGAAGTCCACGAAATACTCTACGAGCCACGCTGTGAGAGTTTACAAAGAGTGGGCCGACGAAAAGGGGTATAATCAAGAACTTCACGAGCTTACTGTTGAAGAACTAGACGAAAAGTTAAGATTGTTTTACGCTGAAGTTAGGAACAAGCAAGGCGAGGAGTACTCAAAGAACACACTTCTGGGGCTTAGAAGTGGCTTTGAAAGATACCTAAATGGGCCTCCACACAACAGAGGAATTCAAATTTCTTCAAATCCTTTATTCAAAAAATCTAACCTGATGCTAGATGCAAAGTTGAAGAACCTCAAGCAGCAAGGGAAGCAAAGTGTTCAACACAAGCCAGCGATTGCAGTCGTAGACCTCAAAAAGTTGAAAACAAGCACCACCATCAGTCCATCTACTCCTTTGGGTTTGTTGATGAATGTTTGGTTGCACATCACCTTGTATTGGTGTCGAAGAGGTCGCGAAGGCCAGAGGAATCTTACTAAGTCCAGTTTCCAGTTCAGCACAGACGAAAACGGCAAAGCGTTCGCAACGATGAGACATGATGAGGCGACCAAGAATCACCCAGGAGGATTTTCAGACACCGAAAGCTATGAAAAGTTTGGTCGCATGTACCGAACCGATGACCCAAATGATGGCTACGATGCCCTATGTTTGTACCTCACCAAACTAAACCCTAAATGCGAGGCATTCTTTCAATTTCCGAAGAGAAATTGGTCAGGTGTCTCCGCTGAAGTCTGGTACGAGAACCGCTGCCTTGGTGTGAATAAGCTGGGAGGCATCATGAAAGAGATAAGCGTGTCAGCCAATCTATCAAAGATTTATACTAATCATTGCGTCCGAGCAACAGCCATCACTCTCTGGTCTAATGCAGGGCTCTCCAACAGGCATATCATGGCCATTTCAGGACATAGAAACGAGCAGTCTCTTCAAAGCTACAACTCGAGGCCATCGTCGATGCAACTTCAACAATGCAGCGATGTAATCTCACGAGCGCTTGATCCAACTACGCAGCTCCAGCAAGCAAACTCTGTGATCCAGCAAGAAAATCAGCAGATCGACGTTACTGCTTCACGATCCACTACCAATGTGGCTCAGAATGTCTTCTCGAGACAAGAATTCGCCACCATGTTTTCTGGTTGTTCCGTCGGTACCATCAACGTTTCATTCACGAAACAATGA

Transcript

Actinostola_00562

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21787	TNP-like_RNaseH_N	TNP-like, RNase H N-terminal domain	Domain	Interproscan
PF21788	TNP-like_GBD	TNP-like, GTP-binding insertion domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR048365	Domain	Transposable element P transposase-like, RNase H domain, N-terminal	Interproscan
IPR048366	Domain	Transposable element P transposase-like, GTP-binding insertion domain	Interproscan
IPR052787	Family	Mitochondrial antiviral-signaling domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21446	DUF3504 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-