Gene detail

Detailed information of KAJ8387540.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8387540.1	RNA-BINDING PROTEIN LUC7-RELATED	AAFF_1.1_unplaced_209	367613	391650	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00152360

ATGTCGGCTCAAGCACAAATGCGGGCGATGTTGGACCAGCTAATGGGCACGAGTAGAGATGGCGACAGCATGCGGCAGAGGATTAAGTTCACAGACGAGAGGGTGTGTAAGAGTCACCTGCTGGACTCCTGTCCTCATGACATACTGTCAGGCACGCGTATGGACTTGGGGGAGTGTGTGAAGGTTCATGACCTGGCACTCAGGGCAGACTATGAGATTGCCTCCAAGAAGCAGGAGTACTTCTTCGAACTTGACGCCACAGAGCACCTGCAGTCTTTCATTGCGGACTGTGACCGGAGGACagagctcgccaagaagcgccTGGCTGAGACGCAGGAGGAGATCAGCGCAGAGGTCGCAGCCAAGGCCGAGCGAGTGCACGAGCTGAACGAGGAGATTGGGAAGCTGCTGGCACGGGCAGAGCAGCTGGGAGGCGAGGGAAACGTGGATGAGGCACAGCAGGTGCTGGAGAAGGTGGAGAAGACTCGCGCCATGAAGAGAGAGGCGGAGGATGTGTACAGGAACTCGATGCCAGCTTCGAGTTTTCAGCAGCAGAAGCTCAGAGTCTGTGAGGTGTGCTCTGCTTACCTGGGTCTCCATGACAACGACCGTCGCCTGGCTGACCACTTTGGTGGAAAACTACACCTGGGCTTCATTGAGATCCGTGAGAAGCTGGATAAACTAAGGCAAACCGTTGCTGAGAAACAAGAGCTAATGCGAATGAGAAGACGGGAGGAACGAGAtaaagaagaggagagagaaaaggagtggGAACGGGAgcgtgagaaggagagagaacgagaacgtgagaaggagaaagagcgaGAAAAGGACAGGCGAAGgaCAAGATCGAGAAGCGGAGAGCGGTACAGGGATGGTGGGAGCTCCTCTTCCCATCACTCCAGACGACATCAGTCCTCTCACTCGCGggaagaagggggagagagggagagggacagggagaggaggcACAGACACAAGGATAGACACCGCTCCCGCTCCCACTCCCACAGGAGCAAGAAGAAAAGGTCCTCCAGAGACAGGTCCTCACcccccagagagagggagcagtcGTCATCactggagagagggaaggaagcaAGAGGAGGGGAGCTCACTCAGATGATGAACAAAATGGCGGATATTTCTTTGGACGAATTGATACGCCGACGGGGTTTAAATACTAGAGGAGCAAACAACAgGCCAGGGTTCCGTAGGGGTGGTGGAGCCTTGGGAAGGACTTTTGATGCGCGTCAGAAAATTGGTCCGATGGATGTCAGGCAGAGACTtgggggtggtggaggtggtgcAGTATTCCACATAAAAGATGCCAGAGAGAAACTCGGCCAAAAAGATGCCCGCTTTCGAATTAGAGGAGGTGGGGCTGGAGGGGGCGTTCAAGATGCCAGACAGATGATAAACTCGCGCAAACAACAACAAGGACATAAACCGTTACTTGCCACACCACAATTACAAATGCACAGCCCTTCACAGGTGCACTTCCAGACACACATGCAACAGATACAAATACACAATAACACCAGCAACACAAATGTCTCTTTTTCGAAAGCGAATACAACCCAATTTTCATCACACCTTCAGGGATTAAACTCTAGAGGAGGAGTTGCAATACAACAAGGGGTTGGGGCGCAGAAAGTTATTGACGCACGTGATAGGCTCAGTCTCAAGAGGAGCATTGCAGCCACGCCAACCCTGGGGTCAGTGACGCCTTTCAAGATCACCAAGACAATTCAGcaaAAGCCGGTGGGATTGACCAGTGGGGTCCGCATCAATGTTCCCAGCAGGAATGCCCAGTCTCTCTCAGGTGAGGTCAACGCCATCCCCAGTCAGCAGATGAAGATCACTACTGCCAACACTTTcctgcacacacagCCTGGTGCCATCGGCTCCCCCTTCTCCCTGTCAGGCCCAATCACAAAAGTGGTCCAAAACGACAGCTATACagctcctccacctccccccacGCCCCTGAGGACCAACCCCAGCCTGTCGGCTCAGCGATCTGCACCCGCCGCCTTGCAGCCAGTGTCTCGGACTGTGGCCGGGGGCCAGACACAGCACGTTGGGGCAAGCGGAGAGACCAGCTCACAGCTTACTGCTGCACAGCCGGCTTTCAGTCCACTGGAAGGGACCAAGATGACAGTGAACAACCTTCACCCCCGTGTTACTGAAGAGGACATTGTGGAGCTGTTCTGTGTGTGCGGTGCCTTGAAGCGAGCACGACTCCTCAAGGTGGGCGTGGCTGAGGTGGTGTTTGTTCGGAAGGAAGATGCTGTCACAGCATACAGGAAATACAACAACCGCTGCCTGGATGGCCAGCCCATGAAGTGCAATCTTCACATACAGGGAAATGTCATCACCTCAGACCAGCCGATTCTACTGCGTCTCAGTGACACTCCAGGCGGTGGAGGGAGGAAAGATGGACTGCCACCTTCTCTGTCGCGCCCTGGGGGTCGTCCTGCTTCCTCCCAGCCAACGCCAGAAGTGGACCCCCAGACCATTCTGAAAGCACTGTTTAAATCCACCCCTCAGGCCCCCTCCACCACCGACTCCCCCAGCTCACAGGCTACCGCCTTCCGCATCAAGATATAA

Transcript

AAFF_T00152360

TGACAGTGTGATGACGTAACATTACATTAAGCCAAATGAGCGTGCACAGTGCTTCCTCGAGCCagtaagagagagggagcagagcgCGCTCTCGAGCGGGGGAAAACCTCGAGACACAGGGccaaaaagagaaataaaacagaacaaaacatcgaTATTGTACGAATTAAAATGATTGATAAATGAAATATAACCGTCTCGTCACAAACAATACGTACATATTACttgaagaaataaatacatcataACTTTTGatgcatagctagctaactagctatccaCATCGCCTGTTTTAAGCCAACTCAACGCCGAGTTgagatatctagctagctacctagctagccaaGTCGGATAGTGAAAATTAGGGATAGATGGAGTGAAGGTGAGACGCATAGGAGGTGGAATTCTGTAAAGTATGTTAGCAGTTGTTGGGTGTCGACAATTCGCACGACCCTAAAGAAGTtcggttattttttttattgaaaaagttGGTTTCCGTTTGGCATGGGCCTGTAGTTGTGGAGTGTCGCTAGCTAGTTACTTCGTGTGTATAACAATCGGCGCGTGGTTTTGCTGTCACGGAACAGTAAAGTCAGTTCGAAAATCAAGGAAGATGTCGGCTCAAGCACAAATGCGGGCGATGTTGGACCAGCTAATGGGCACGAGTAGAGATGGCGACAGCATGCGGCAGAGGATTAAGTTCACAGACGAGAGGGTGTGTAAGAGTCACCTGCTGGACTCCTGTCCTCATGACATACTGTCAGGCACGCGTATGGACTTGGGGGAGTGTGTGAAGGTTCATGACCTGGCACTCAGGGCAGACTATGAGATTGCCTCCAAGAAGCAGGAGTACTTCTTCGAACTTGACGCCACAGAGCACCTGCAGTCTTTCATTGCGGACTGTGACCGGAGGACagagctcgccaagaagcgccTGGCTGAGACGCAGGAGGAGATCAGCGCAGAGGTCGCAGCCAAGGCCGAGCGAGTGCACGAGCTGAACGAGGAGATTGGGAAGCTGCTGGCACGGGCAGAGCAGCTGGGAGGCGAGGGAAACGTGGATGAGGCACAGCAGGTGCTGGAGAAGGTGGAGAAGACTCGCGCCATGAAGAGAGAGGCGGAGGATGTGTACAGGAACTCGATGCCAGCTTCGAGTTTTCAGCAGCAGAAGCTCAGAGTCTGTGAGGTGTGCTCTGCTTACCTGGGTCTCCATGACAACGACCGTCGCCTGGCTGACCACTTTGGTGGAAAACTACACCTGGGCTTCATTGAGATCCGTGAGAAGCTGGATAAACTAAGGCAAACCGTTGCTGAGAAACAAGAGCTAATGCGAATGAGAAGACGGGAGGAACGAGAtaaagaagaggagagagaaaaggagtggGAACGGGAgcgtgagaaggagagagaacgagaacgtgagaaggagaaagagcgaGAAAAGGACAGGCGAAGgaCAAGATCGAGAAGCGGAGAGCGGTACAGGGATGGTGGGAGCTCCTCTTCCCATCACTCCAGACGACATCAGTCCTCTCACTCGCGggaagaagggggagagagggagagggacagggagaggaggcACAGACACAAGGATAGACACCGCTCCCGCTCCCACTCCCACAGGAGCAAGAAGAAAAGGTCCTCCAGAGACAGGTCCTCACcccccagagagagggagcagtcGTCATCactggagagagggaaggaagcaAGAGGAGGGGAGCTCACTCAGATGATGAACAAAATGGCGGATATTTCTTTGGACGAATTGATACGCCGACGGGGTTTAAATACTAGAGGAGCAAACAACAgGCCAGGGTTCCGTAGGGGTGGTGGAGCCTTGGGAAGGACTTTTGATGCGCGTCAGAAAATTGGTCCGATGGATGTCAGGCAGAGACTtgggggtggtggaggtggtgcAGTATTCCACATAAAAGATGCCAGAGAGAAACTCGGCCAAAAAGATGCCCGCTTTCGAATTAGAGGAGGTGGGGCTGGAGGGGGCGTTCAAGATGCCAGACAGATGATAAACTCGCGCAAACAACAACAAGGACATAAACCGTTACTTGCCACACCACAATTACAAATGCACAGCCCTTCACAGGTGCACTTCCAGACACACATGCAACAGATACAAATACACAATAACACCAGCAACACAAATGTCTCTTTTTCGAAAGCGAATACAACCCAATTTTCATCACACCTTCAGGGATTAAACTCTAGAGGAGGAGTTGCAATACAACAAGGGGTTGGGGCGCAGAAAGTTATTGACGCACGTGATAGGCTCAGTCTCAAGAGGAGCATTGCAGCCACGCCAACCCTGGGGTCAGTGACGCCTTTCAAGATCACCAAGACAATTCAGcaaAAGCCGGTGGGATTGACCAGTGGGGTCCGCATCAATGTTCCCAGCAGGAATGCCCAGTCTCTCTCAGGTGAGGTCAACGCCATCCCCAGTCAGCAGATGAAGATCACTACTGCCAACACTTTcctgcacacacagCCTGGTGCCATCGGCTCCCCCTTCTCCCTGTCAGGCCCAATCACAAAAGTGGTCCAAAACGACAGCTATACagctcctccacctccccccacGCCCCTGAGGACCAACCCCAGCCTGTCGGCTCAGCGATCTGCACCCGCCGCCTTGCAGCCAGTGTCTCGGACTGTGGCCGGGGGCCAGACACAGCACGTTGGGGCAAGCGGAGAGACCAGCTCACAGCTTACTGCTGCACAGCCGGCTTTCAGTCCACTGGAAGGGACCAAGATGACAGTGAACAACCTTCACCCCCGTGTTACTGAAGAGGACATTGTGGAGCTGTTCTGTGTGTGCGGTGCCTTGAAGCGAGCACGACTCCTCAAGGTGGGCGTGGCTGAGGTGGTGTTTGTTCGGAAGGAAGATGCTGTCACAGCATACAGGAAATACAACAACCGCTGCCTGGATGGCCAGCCCATGAAGTGCAATCTTCACATACAGGGAAATGTCATCACCTCAGACCAGCCGATTCTACTGCGTCTCAGTGACACTCCAGGCGGTGGAGGGAGGAAAGATGGACTGCCACCTTCTCTGTCGCGCCCTGGGGGTCGTCCTGCTTCCTCCCAGCCAACGCCAGAAGTGGACCCCCAGACCATTCTGAAAGCACTGTTTAAATCCACCCCTCAGGCCCCCTCCACCACCGACTCCCCCAGCTCACAGGCTACCGCCTTCCGCATCAAGATATAACACCACACCCTAACTAATTGACACACACCCCTAACACATAtgggacacatacacacagacaagtGATTAGAGGGTTCCACATTAATATGTAATGAACACACACTCCACAGAGAACTGCATTTGACATTCAAGCATTACACAATACATCTCACAAATActgatgtgcacacacacacacacacactgatatacaTGATGCAAACGACTCACCATCCATATAAAGAAATGACAGAATTATTTGGAACTATGCAGACACATGATGAAACTTGCATACTGTACTACACAACATAGATACAAGAGACCATAATATACATTTGCCCAGATACAGCACAAGGCAGAAATAATcatgaaatacatatttcatttaTCCAAACCACGCTATACAGCCTCGCAGagtgttccacacattgacagaATACACTTTGGGTGTTGAAGATTGGTTCAAGAGAAAGGACAGTTTATGGGGTCATCGTAGCTATTTAAAAGTTATATTCTATTAACACAATCATGTTCCAGTTAATAACTGAAAATGCAAGAGTGCCTCAGCCCTACTTAACAGAATTCGGCCCTCTGTTGGTACCTTGGTTAGATGGTGAAACCCTCTGGCATACTTTTgcagtaaaaacaaatacacgGAAGTATCAAGATGCTTTCTGTGCTTGCGTGCCGTAGATGCACAAATACATGTTGTGTGTCTTAGAAAGGACCAATTGAGGAATTGCTGATTTAATGTcaagaatttgtttttaatagatTCTCAAACGATGTGCATTAATTATGTAGAAGACATTTTAGTTTTTGGCAGTGGTTTGTATCACATGATTCATTAATCATATGTTCAAATTGTTCACATTGAACACCATCTTTTTGTGAATCGTGTGATATTTGATTATGTTCCCATTAGCCGACAAGGGATTCATAAGCTGATTAGTACATCCCCTACACTGTCAGGAAAAAAGGTTTGAAACAGGCTGTCATGATTTTTTTACGAGCGCACTAAGTCATAAACGGTTTGTGCACACACTTGCAAAGATGCAGTTCAGCAATCGGAGAGGAATTCCCTCCATCTGCTGTGTCtgtcagtgtttttttctctcattgCATTCTGATTGTTCTGTAGTTATTGTAGCTGTTAATACTCTGCAGTCTGTGAAGCAACAAAATGGATGATGACtcgcttgtttttattttttttattttctctcaagCAGTCTGTTAATAACTCGGTTGTTACTACAGCTGTCTGTCACAAACACGCCAAGCAGTGTGTTCAAAGCTCTGTCCCTGTGAAAATTCTCCAATAAATGTTGCTTTATAGAATGTTTCAGGGCTTTATTTTCCATTAACATTTGTTCGGTTTGCTGTGTTTGAGTAGCATTGTAAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF03194	LUC7	LUC7 N_terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR004882	Family	Luc7-related	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034784	Domain	PDIP3, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12375	RNA-BINDING PROTEIN LUC7-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005685	Cellular Component	U1 snRNP	Interproscan
GO:0006376	Biological Process	mRNA splice site recognition	Interproscan
GO:0071004	Cellular Component	U2-type prespliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-