Gene detail

Detailed information of KAJ8383312.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8383312.1	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	AAFF_1.1_unplaced_296	133746	137221	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00221720

ggagggaggggtggataGAAAGAAGTGGGCCGGAAGCTTGAACCCAGGACTTTGGTGTCGAGAGACGGCAATCATTTCCCCGCACTCACTCGCCCCCTAGCGAGACCCACTAATTGCTCAAACTGCCGTGCATTTGCAGTGTTATTTCCAGCTCTGTAAAAGGCACACTCAAGTGTACGTATTTAAGCAGGCAGGAGAAAATGACGACAGTGTGGTGGTGAGCACGGTATAATGGAACACGCATAGAAGTGGCCTTTGTCTGTGCGCACAGAGCAGCCGTGAGCGGGCAGTATGATGCCAGTATAAACATGAGCAACAAGTCCCCTCAATCCCAACACATTTGTGCCTCTCTTTTTTGTCCTTGATGGTCCAAGTTGGAAATGTAGGGCTTTGCCAACAATGCAGTAAattgtgtatatttttgttcatCGCAAAAGGCTCACAGGCATTCATAGACTGAGTGTGCTCGCATGTTGGCACATGGCCCACTAGGTGGCTCTGCTGAGCTTAGTTACAGAAAGGCGTGCCACACATTCACAACATTTCAGTATGCCACATTCCCAGGAGCTGAACTTCTCCATTAGAGCATGTTGCAGATTGACCGCTGGGTCCTAAACCCTGCCCTGCTGCCTTTTTCTGGACGGGGGGTTCTTCCCTCTTCTCCCCCCCCTGCAGGACGGAAGGaagttttgattgttttgtttgtgtatttatttgttttcctgCAGTATGAAGGAAAGTTTTGATTGTTTTCCCACAGGACGGAGCGGTTTTGATTGCTTTGTTTGTATGTTGGTTTTCCCGCAGTACAGAGGGaagttttgattgttttgttccctatgtttgtttgtttgtttccccgCAGTATGAAGGGAGAGTAATGTATGCCATTGAGCAGATGCTTTTGATTGTTTTCCCACAGGATGGAGATAAGTTTTGGAGAATGCCAGAGTGCTACATCCGCGGCAGCACCATAAAGTACCTGCGCATTCCGGACGAGATCATCGACATGGTGAAGGAGGAGGTGGTGTCCAAGGGCCGCGGGCGGGGCGGCGCCCAGCAGAACAGACAGCAGCAGAAGGGGCGTGGCGCAGGCCCCGGCAGAGGTGTGTTCGGCGGGCGTGGCAGAGGCGTGCCCGGGGTCGGGCGGGGCCAACCCGAGAAGAGGCCTGGCAAACCGCAGGGGGTCAAAAACCAGCACTGAGAGAGGCGCTGGCCGCGGTCGCAGCTCAGACAGCcggacagcagggggcagcattcGCTGGGCTCAGAGACTGTAGCGAGAGCTCCACTCCCCGGCACGCTCGCTCTCTCTGCTTGCGGGCCCCTCCGGCAACGGCCGACTCTCCCTGGACCCCACGTGAATTTGagttttctgtttttcataaTGTGTTGTTTCACAAGCAGGGGGAAGTGCAAATCTGTCAACTCTGAACAGGTTTAAACACGGCTGCTATTAAGTCATGTGTTGAAGACGTTGTTTTATGTGTGATTAAGCAAAATTAGGGACATTGTCAGCATATTTCTGTGTTCTTAGAAACCCCCCATGCATAGAGCTACATATTATAAGGTGAAAAGGGGCTtaaagtcccccccccccactccacctcTCCCTTTTCAAGTTtgaatcatatatttttttattttatgcttcCCTTTGTTGAGAGGTTTGTTCAGGGGGAAAAGTCCATAATGTTGACAAATATTTCTTTTCatagaacaaaaataaacaataaagcatgtccatttttttgtttagttaaaCACATAACAGTTGTTGTTACTGAAtggaaaagtgaaaaatcatctCGAATGCCTACATTCTGTCCAAACCACAGCGgcacacaagagagagagagagagagggacgacCGTCTGCGTTCTCTTTTTGTAGCGAGTTACATCTTTGCTTAGATACAGGTTTGTTTTTGCTCTCGTTGTGACTCGGTCTGCAACTCAATAAAGAACACAGACCCCCGGACAGATCGACATGGGACAAATATTATTCGCAAATATTATTTGGCACTGTCTTATCCAGAGGCTCTTAACAGGGGGAATATGGTGCAAggaaattggctgcaaggtatcACACAGAGAGTAACTGTAGGAGGGATGTCTtgcctaggtgctgtgggcagtggagtcccccAAGGATCGGTattgggacctctgcttttccttatttacataaattatcttgatagggatgttggCATCAAAATAgctacatttgcagatgatagaaaacttgggggtttggcaaacaggttAGAAtggactaaagtaatccaagatgatttaaacaaaatccagaagtgggcagaaacctggcagacGACAGGTTTACacagctaaatgtaaagttatgcatgtgggaaataaattaaagactaTTCTATGGGAGGAGCCAAATTGTAATTTCTTcagtttgaaaaagacttgggagtaaTAGTTGAGTTGGGATCAATCGTGggtctaagcattgtgctgtaccAGTGAAAAAGCCCAACAAAATGTTGGGACATTTAGCGAACAGTATTCACtataggcctcccgggtggtctagtggttacaacgttcgacgctggccactgcgatcggggttcaattccaccagccatgccagagtcggctctggcctcCAGGGGGcgtcaattggctgtctgccccagggagggg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR010920	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR027141	Family	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000387	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005688	Cellular Component	U6 snRNP	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0017070	Molecular Function	U6 snRNA binding	Interproscan
GO:0033962	Biological Process	P-body assembly	Interproscan
GO:0097526	Cellular Component	spliceosomal tri-snRNP complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-