Gene detail

Detailed information of Chiridota_g3554 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g3554	HELICASE WITH DEATH DOMAIN-RELATED	chr_2	67068469	67082916	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g3554

ATGGCATCTGCGCCTCACAGGACAACATCCGATGCAAGTGCTGCAGCCAACCATAGGAGACCATGTGTAAACCCACCACAGCAGATAAACTTCACCCCAAGACAATACCAGCTGGAACTACTAGAGGCTGGTTTGAAGAGGAACACTATTGTCTGTTTGCAGACCGGTTCAGGGAAGACCTTTATTGCTGTTATGTTCATCAAAGAATTATCTCATGAAATTCGCACATCTTTTAGGGAGGGTGGGAAAATCACTGTCTTTCTTGTTAATACAGTTCCTTTAGTTTCACAACAAGCGAGTGTTATCAGGATTCATACTAACCTGCAAGTTGGCGAGTACATTGGCGCCATGGGGGTAGATCGCTGGTCAAAGGAATTGTGGCACATGGAATTCCAAAAGAACCAAGTACTTGTAATGACCTGTCAGATTTTCTTAGACATTCTCAATCATGGTTTCTTGGGTCTCTCAAGGGTCAACGCACTTATATTTGACGAGTGTCATCATGCTGTGAAGTGTCATCCTTACAAGGAGGTCATGAAGTTGTTTGATGTTTGCCCGGAGAAAGATTACCCAAGAGTGATGGGTTTGTCTGCATCTGTGCTCAACAGTAAATGTACTCCTTTTCAACTGGAGAAGAAACTTTGTGACCTTGAGATGACCTTAAGAAGTACAATTGAGACGGCTACTAATGTCCAGACGGTGAGTAGATTCGGGACCAAGCCTGAGGAAAGCATCATATATTGTGAGGAGAATGACCACTTACTGCATCACACGCATGACATCCGTGGTACTCTTGTTGAAACGCTTAAGTTTCTCGACGGATGCAATCAGTTTCTCAAGAAATGCCATTCTGTTGAAATAGAAGATGAAGATGAACTCGCAAAGAATGTAAGGTTTGAAGATGAGAAGGATCCTACATTGGTGCCAAGACAGGCAATTCGTGAGGCCTTATCAGCTCTCGATGATATTGGGCCCCTGGGACTCAAACTTGCCGTGCCTTTGATTTTGCGAGAACTCCAAAAGCATGAAAGATCACAGCTTATCATTTTCAACAAGAAGCTTTTGGTCTATGCCTGCACTCAGCTTAGACTTGTGAAAAAGATGATGGCGTTTCATTTGAGACGAGAAAAGAACATATGGTCGTGGACACTTTTGACTTCCAAAGTCAGGGAACTTTTCAATGTTCTTGAAAATTTTAGACCCCAGGATGTCCAGAATGCTGCTAGAAATTTGGACACCAAAAGGGAAAGAACACGGAAGACAGGGGTTACGAAAGATGAACTCCCTTGTGAGGTGGTGGAAGAAGATTATGAGGGAGAGAGTGATGAAGACATACGTGAGGAACAAGAAGATGAAGAAAACCTGGCAACCACAAATGATACTACCTTGTGCGGCATTGTCTTTGCTGAGAAACGTTTCACCGTAGCAGTCTTGCACAAGTTGATGCGGAAATTTCAAAAGCAGAATCCTGCTCTCACTTTTATTTCGAGCAGTTGCATTATGGGCCACGGTGGGGTGGGGCTTGGTGGAAGAGGGATGCAAACTCAGACGCAAGCCAAGAAACAAGAGGTGATGTTGAGGAGATTCAGAAGACATGAAACCAATTTGTTGTTTGCTACTAGTGTACTCGAGGAAGGAGTGGATGTTCCAAGGTGCAATCTGGTTATACGGTTTGACCGACCAAAGCAGTATCGGTCATATGTCCAATCAAAAGGGAGAGCACGTGCTCACAGCTCTCACTACATGATGCTTACAGACACAATAGAGAGACCCTTATTTGAAAGAGATCTAGCCGAATATAGGAAAATTGATGAGATTCTGCAAAGCAAATGTCACTACAGGCAGGAACATGAAAAGAGAGACATAGACATGCACATGGCAGATGATCTGCTGCCCCCATTTATGCCGAGAAAAGAGGAAGGTGCCCCAAGGGTGACGATGACCAGTGCAATATCTCTTGTCAATAGGTATTGTGCCAAGTTGCCAAGTGACAGTTTCACCCATCTTACCCCTAAGTGTCACATCAAGGCGGTCAATGAGGACCCGAACCATCTACAATACCAAGCTACACTCTACATGCCAATCAACTCACTGCTCAGAGATCCAATCATAGGTTCACGGATGCCAAACAAACGATTTGCAAAGATGGCAGTTGCTCTGAAAACCTGTAAGAAACTGTATGAGGCTCGTGAATTGAATGATAATTTGCTACCTGTTGGCAAAGAAACCATCCTTGAGGAGAGTGCATACAACATTCAGATGGAGGAGGTGGGTGAGGGTGAGGGGAGACCTGGGACAGCACAGAGGAGACAATACTATGATAAAGCTGTAAGAattgccagtcatcacttttgtattgccagtctttgtttttgtattgccagtcatcacttttgtattgccagtcattacttgtattgccagtcatcacaatgtattgccagtcatcacttttgtattgttagttatcacttttgtattgccaataattgtgtttgtattgccatccatcacttttgtattgctattcatcacttttgtattgttagttatcacttttgtattgccaataatcatgtttgtattgccagccatcacttttgtattgctattcatcacttttgtattgctagtcatcacttttgtattgctagtaattgtgtttgtattgccaatcatcacttgtgtattgccagtcatcacttgtgtattgccagccatcacttgtgtattgccagccatcacttgtattgccagtcatcacaatgtattgccagtcatcacaatgtattgccagccatcacatttgtgttgttagttatcacttttgtattgctattcatcactttgcattgccagtcatcactttCGTGGATTGCACATCAGTAG

Transcript

Chiridota_g3554

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF03368	Dicer_dimer	Dicer dimerisation domain	Domain	Interproscan
PF20930	Dicer_PBD	Dicer, partner-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR005034	Domain	Dicer dimerisation domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038248	Homologous_superfamily	Dicer dimerisation domain superfamily	Interproscan
IPR048513	Domain	Dicer, partner-binding domain	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016891	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-