Gene detail

Detailed information of Chiridota_g28304 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g28304	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED	chr_16	24259802	24269047	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g28304

ATGCCTGACCCACCGCCAATGCCTATAGTGGATACAGTACCACAATTTAATACATATGCCagtttcgaagagtggactgaggtactagatgcttggttcgtttcgaatggtatcaaagatgatgccaagaaacaggcagtatttttcacaagcattggtagcaaagcgtaccaccaattaagggcgctgctacagccaaataagccaagtgaaaaaacatacactgaatgtgtagcggctctgcagttgcatttttctccaaaacctagtgaaattatacaaagatatcgtttcaatacatacacgcaacgcaatggagaaacaattggtcaatttgttgcccaattgagacaattaagtaaacgctgtaatttcacagatttgcaaaatatgctaagagataggttggtagtcggggtcaaagatgcaaccatccagcgcaaattgctgagtgaaccctctctcacttttgccaaggccttatccatagcgacagccatggagacggcacagagagatgtggaagacttgaaaaggataggggtagttaatgaaagcatgcataaggtccatccccactcctttagaaaacctatggccggcaaacctagggaaaacagggaagcccctaaattttctgaaagagccaaaacaggccaatataatcaagcaagccagaggtgttggagatgtgggtctgtaaaacacattccaaaccaatgccaatttcagaataaaaaatgtttttcctgcaaggaatcggaacacacaaaatcccaatgccaaaaggttcatgacttcagtaaacgaaggggaaaatcaaaatttcacaatttggtgggggattctgagtcagacgacccagacaagcaatcaccctatgcatacttacctgcagcctcgggtagtagtaatgaacttagacacctgaatggtgggaaagtaaatagccttggtcagaataaaccataccttttagaggttgaggtggaaggcagaactgcctcattagagttggatacagATATAGCTACAAATATGGATTTTCACAAGCAAAATCTAAAATCAATTTGCCGTCTTTGTGGAACAAAGCCAAACCAAATAGCTCTTCTTACCCCTAAAGAGCAATTGTCAAAAGACATCGAGAAAAGCTTGGGTATAACATTTTCAGAGGATGATATTTATATTCATCCTTGGGGTATTTGTAGTCCTTGCCGCCTGAAAATTACTCGGTGGAAGAAGGCCTATGTGAAAAAGAAAAGGGAGCTTCAGCCTCCAAACATCGTATTGTATGAATTCAAAGCACATGATGGGGAATGCGGATTTTGTCATTCTGAAAAGTGGAATCCCGAAAGCCTACTTTCATTTGCTAAAGATAAGGGATACCAGGCCTGGGTGGCATCTGATGGAAGTCTTGTTGCCGTGATGTTGCACGAGTTTGGGAGAAGTGTTCGAAAGAGTGTGGTCATCCAAAAAGAGACTGTTATTGTATATATTTTAGGAAGGCTGTTGAAGCGATCATTTGAGTCTCCCATCGAAGCCCTCAAGGAAGTAGCAAATTTGGAATTATGTGTTGGCAATGAGGATTTTCAGAGTCTTGCTGAAAAACACCAGAAAGAAGGATTTGTTGGAAGTAAGGGACAAACTCTTGCTGTGGTGGAGGACTTTTTTCAAGATCAAATGTTGGCCGGGATACAGACAGTAAGACATGTCAATTGCCACCTTCTTTTGTCACTTGAAGAAACGTCAAACACTAGGTCTGCCAACAGGTGCTCAGTATGTAAAATGTTTCGGTCGAATCTTTTTGTTAAGCAAGCAGCCCTTAACAAGGAAGCAAATGTATCTTTACAAAGTCACACTAAAAATGTTCTGCTTACAAAGGATCAGCTAGTAAAGAAAGTGACTTATTTAAGTGAGGACAAGAAAAGACTTCAAGCGAGAGAAGGACAATTAAGATTAAAGGTTGCAAAGCTAATAGAGACAGAAAGTGTGTCTGTTGGAGACAATGAATCAGAAAAGCTTGATCAGGTCATCAAAAGTCATGAAGCAGAATTGGATGCGTTATTCCCTCCAGATAGCTACAGCAAACTTCTGTGGGAACAGCAAAAAAAAATGAGACAACAGAAATCTGCAAAAGGAATGCGTTGGCATCCTGCTGTGATCAAGTGGGCAATAGCGATCCATTCAAAATCTTCATCTGCTTATGATGTGATGCGTGATACTGGTTTTCTTCTTCTCCCTCACCCACGGACACTTTACAATTATACACACTTCACCAATCCTACTTCAGGCATGAATATTAATTTACTCAACAAATTCTACAAGGATTGGAATATGGATAAATTATCTAAGCATGAAACCTTCGTGAATCTATTATTTGATGAGATGAAAATTAAGTCGGGTTTAGTGCTTTCAAGAAGTACTGGCAAGTTGGTTGGGCTCTTGGACGTTGGACCAGTAAACAAAGAAATTGAAAACTTTGAGAGGAAATGTACGAAAGCAGGTACTGACAATCCTCCATTGGCTACACATGTTCTCCTCTTTATGGTAAGGGGATTAACATCGAAAATGAAGTTTCCCACAGCGTACTTCCTGACTAACAATGCAACAGGATACCAAATTTACGAAATGGCAATGAAGTGCATGAAAGCCTTGAAACTGCTAGGACTAACCGTACTGAGTCTTTCTTCAGATGGAGCTGGTAGTAACAGGAAATTTTATTCAGTGTTAGCAGGATCATCGACATCTTTTTATCCCCATCACAAAGCCAAAAATGTCTATGAAGTGGGTGAAGAAGTATTCTTCATTTGTGACCCACCGCACCTGATTAAAACCCTCCGGAACAATTTTGAAAATTCAAACTGGAACAAGAAGAGCAGAAAATTATTGTTCCAAGGAAAGCCCATTCAATGGACACATCTACTTCAACTTCGAGAATGGGATGAAGGTCAGCATCGGCTCACTCCAGGGTTGAAGCTTGTGCCTAAATTATCATATGAACACCTACATTTGACTCCTGGTTTAAGAATGAAAGTCAGCCTTGCAGCTCAGGTTTTGTCTAACACAGTTGCTAATGCTTTGAAGATGATGAAGAAGCCAGAGTTTCAATCTACCATTCACTTCATTACCATGGTCAACAAGTTTTTTGACTGCTTGAACGTCTCATCAAAATCTCAGGGGCAGAGATCTAGGAACGACAACCTCAAAGCCTACACAAGTGTTGATGACATTCGTATAAAGTGGTTGAAAGATGAATTTTTGAAGTTCTTGGATGAGTGGAGACAGGAAGGAACACAGCATCAAGAACTTAGTGCAAAAGAAAGGAAGAAATTATGCATTAGCAAAGCTACTCTTGTGGGATGCAACATAACAGTAAACTCTTTTGTGGAAATTCTGAAGTACATTCTGCCAATGGACGGGGTTGAGTATTTTCTTTCCGACAAACTGAATCAAGATCCTGTGGAGGAATTTTTCTCGAAACAACGCGGTGCTGGTGGCCATCATGAAAACCCATCAGCCGACCAATTTGGCCATCATCTTTTGAAAAATGTGGTTGCTGGTAGCAGTTCTTTGGCATCAAGGAAAGGCAATGTTCGTCCAGACCAGTCACGGATGAAATATTCTGATGAGCCCCTTCCGAAGCGAAAAAGATCAAGTAATCCGTGA

Transcript

Chiridota_g28304

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14893	PNMA	PNMA	Family	Interproscan
PF21787	TNP-like_RNaseH_N	TNP-like, RNase H N-terminal domain	Domain	Interproscan
PF21788	TNP-like_GBD	TNP-like, GTP-binding insertion domain	Domain	Interproscan
PF21789	TNP-like_RNaseH_C	TNP-like, RNase H C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR048270	Domain	Paraneoplastic antigen Ma-like, C-terminal domain	Interproscan
IPR048365	Domain	Transposable element P transposase-like, RNase H domain, N-terminal	Interproscan
IPR048366	Domain	Transposable element P transposase-like, GTP-binding insertion domain	Interproscan
IPR048367	Domain	Transposable element P transposase-like, RNase H, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33198	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-