Gene detail

Detailed information of Chiridota_g2219 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g2219	SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER	chr_2	19647103	19771611	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g2219

atggctatcatgattggtacacttcaggccagggatttcgatatggaatgttatcgtgatcacgatacacgatgcgacggccaatttaatgtgggcgggtactTGGGACCAAACCACATTCCATCTGAAGAAGGCAGTACTAAACCACAGAGCATGGAGCGCCCTATTTGTAATTCATTCGCATCAGTGATGGTGTATGATGACACCAACAGGAAATGGCTACCTGCTGGAGGTATCAGTGGCATGTCCAGAGTACAGATCTACCATCATCAAGGCAATAATTCATACAGAGTGGTTGGACGCCTCAAATCTGACCAATCAGTAGTTATAAATTCATCTATCCTCAAGGGACTCAAATACAATGAAGCCACACCAACCTTCCACCAATGGCGAGACAGCCGGCAGGTCTACGGTCTCAACTTCCAATCAGAGGAAGACGCCCAATGTTTCTCCAAATTTATGCTTTCCGCCTTAGAACAACTATCAAGTCAAGCACAACCAAAGCCACCAGGCCCCCCACCGTCTCAGCCTCCAGCCAGACCCCCAAGCCAGGCTCAACCAATCAGCAACCATGTACAGAATGGACCAGTGTCAAATGACGACTCGAACAGgcagttccaagttcgtattggccacaccctctccaagccgtacccccaagaagagggcgtcccccaaggcagcatcctctcccccactctcttcaacctgagcattaatgacatcgggaatgaccttggccccagcatcaaacgtaccctctacgtggatgacttcaccatcttctactcctcccctagctttcctattgttgaaaataggcttcaaaccagcctcaatcagctgcaagtctggagcaacaataacggttttagattctccaaagacaagacagtctgcatgcacttttgtcatttcaacaacctccaccccaacccgaactttgtgctcaatgggaatcgcatccctaaagttgaaaacacaaagttccttggtctaactctagaccccaagctcacctacaagccacacatcaccaacctgaaactaaaatgcaatagctccctcaacctcctccgactgctctccaacactacttggggagcgaaccgctatgctctcctcaaaattttcaggctcaccattcgtgccaagcttgactatggcaatattgtttactgtgtcgctcacaactcatacctcaaccacattaacaccatccaaaatgaagccctcaggctttgtctaggagcctacaggacctccccaatcactagccttcatgttgaagccaacgaacccccctttctacttagatgtaaaaagcttagcctctcctatgcttttagagtcctcaccaacacccagaaccctgtttacaacctcattaggtaccccaatttctcctccctctttgataggactaaaaccctatcgccccccttcagcttacgcattaaatcagacctctttcaacttggcatcaaccccgccactctcggcacctattcctggcccacttttccgccttgggccaccccccttccttctgtccacctagacctctccacttataacaaaactcaaactcaccctaatctcttcatcaatctccacaaccaaatcaaagaccaactctcaaattacacctccatctatactgatggctccaaggaaggcaacaagacagctgctgctgccatcatccaagacatcaccctcagtagcagacttcctgaccactcatccatcttttcagccgaggctaaggccattctcctcgccctcaactttattgagtactctcctcttagtcactttgccattttctctgactcaaaggctgttcttacttcattactcaatcttaaatgggataacctcacctgccacctcctcctccggaaactcttttcttccaccctctgcaggaaaagtgttcttttcttctggatacccagccatgttggcatccctggcaatgacagggctgatacagccgctaagcttgcccttaacctcctcccttccccttttcccaaaaccctctctgacatcaaaccgcttatcgcttctcttgttcgtgaccgctggcaaaccttatggaacttccaaattgataacaaactccatgttatccagcccacaatcccgatcaaatccaccatcaacaacctttctcgtatcgacaacgttcatattacccgtcttagaattgAGCTCCAAGAAACACAGATACAACACAGAGATATTCAGCAGCAGACCCTGTTCCAACAATCAGTTCCAGCCGACCCAGTCCACCTGAAGCTCCAAGCGGGCCCCCAGTACCAACCAGTGTTCCAGCACCTCCACAACCTCCTCCAGTACCTCCTGTATCAGGGCCCCGCCAGCACCGCCACCTCCTCCAGTTGGTGGTGGAGCCCCAGGGGCACCACCAGCTCCACCACCCCCTCCCTAGGAGGCCCAGTGggtggaggtggtggtggacccccagttggaggtggCTTAGCAGGAGCTATTGCTGGAGCAAAACTGAAGAAGGTATCAAGGGATGAAGAGCCAAAACCAAAAGCAGGTGGAGGAGGTGGGATGTTAGACATGATGAGCGAAATGCAACGGAAACTCAAGGAGAGAAAAGCAGTAACGGATGGTGGTGATCCCAAGCCTCCAGCCGGGAGGATATCACCCACAACAAATGCAAGGAGCGAACTAGCAAACAAGAAGGCTTTTGATAAAAGTGGGCCTCCAATCACAAGTAAGCCTAAAGCCAATGGAATGGAACCAAGTGCCTCACCAAAAATAAACAGGAGAAGGGGGTCTTTCCAGAATGGAAATACAGATAGTGACCTTGAGAAAATGAAACAAGAAATTCTATCAGAAATGAGGAAAGAGATAGCAAGTGCAAAGTCAGAAATCATTGATGgccataaccagcaattgtatacatctgcgactttccccaatgtgaaaggctcacttaacccAGGTGTTTGTCACTAG

Transcript

Chiridota_g2219

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00568	WH1	WH1 domain	Domain	Interproscan
PF08776	VASP_tetra	VASP tetramerisation domain	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000697	Domain	WH1/EVH1 domain	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR014885	Domain	VASP tetramerisation	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038023	Homologous_superfamily	VASP tetramerisation domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11202	SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-