Gene detail

Detailed information of Chiridota_g19943 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g19943	ATP-DEPENDENT RNA HELICASE	chr_11	8765809	8900536	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g19943

ATGGGGAAGAAAGGCAGAAAAAGAGATGTAGAAGTCAGAGAAGACTTTAAACTTGGCGTGCAAGTCGTTATTGACGGGTTCAGAAATGACGAGACCAAACGAGAACTTGAATTTCCATCATCTTTGGACAACAACCAGAGAGCTTTTATTCACCAATATGCCGCATCTCTTGGGCTTAAGTCTAAGAGCCGAGGAAAAGACTTTAATCGTTATCTGACTTTGTTCAAGAAAGATATCAATTCTGTTGCTGATCAGATCCCAGTGTTTCAGTTTACACAGTCGGCACGGCGTGAAACTCAGGGGTTGTTCCAGAGATATCCGGTGACTGCCAGGGAGAGACAGGAACTATTGCCAAGGACAGAGAGGAGGAGATTTGGTCCAAATGATGCAAATCCAGCACGGGATATCAAGCCACCGACCGGCAAATTAACGAGTGTGCTACCTCAGATTCCCATTAAAAGAAAACCATCCGACCTGGATCAATTCAGGAGGGGTCTGCCGGTATTTGCAATGGGTACTAGTGTGCTTGAATTGGTCAACAGTAACAGGGTCGTCATCATAGCTGGAGAAACAGGGTCAGGAAAGACAACTCAGGTTCCACAGTTCATCCTAGATCATGCGTGTGAAACCGGTCAACCTTGCCGTATCATCTGTACGCAGCCTCGCAGAATCTCAGCACTTTCGATATCGCAGAGAGTGGCTGCTGAGAGAGGCGAGACTGTTGGACAAACTGTTGGTTTCCAGATCCGCTTAGAGAGCAGGGTTTCGCCAAAGACATTGTTAACCTTCTGCACCAATGGCGTGCTGCTGAGGACACTCATGATGGGTGATGCAGCTCTGAGAGCAGTCAGTCATGTGATTATTGATGAGCTTCACGAGAGGGATCGTTACAGCGATTTCTTGTTAACCCAACTGAAAGCGCTCTTGCCAAAGCACCCACACCTACGAATAATCTTAATGAGTGCTGCCCTTGATATTGATCTGTTTGTGGGGTACTTTGATAACTGTCCAGTTTTGGAAGTTCCTGGTAAACTTTTTGATGTTGAGGAACTGTTCCTGGAAGATGCATTGAAGTGCACCGGATACACAAATAAAAAGATGGAGAAATATTTGAAGGACAAAGAGAAAAAAGCAAAGCAATGCGCAGAACTGGACAAATGGACATCAGGTCAAGTCTCCGTCTCCTCAGAGGTGGGGGCAGCAGCAGCAGCTGGTACCATTGCAAGCGGTGTGTCCAGTTTGAGGGAGGGTCTTGGCTCATGCAGTTTAGATGTGCCCTTAGATGCTAAGGACATGCCTGATTGGTTGGTAGAGGCAACAGAAAATGCCATCAGCCAGGCATGGTTGCATGGATCTGATGCTGCCTTCTCACAATTACTACATTACATCATGAGTGAAAATGTCAGTGTTGATTATGCCCATTCTCACACGAGTATCACACCACTTATGGCAGCGGCTGCACGAGGGAACATGGAGGTGGTGGAGAAGCTCTTGTCATTTGAGGCAAGTGTGCACCTCAAGACTGCTAACAAGAAAACTGCTGCAGATTTGGCCAAAATGTGTAATCAGACGGAAGTAGCTACTTTCCTGGAAGCTTACAGGCAATCACTGGATGACACATTAGATGATGACTCCTCTCTACCAACAAACGGTGCCGTCATCAGTTCTGAAGACAAGGAGCTGCTAGAGGCCTACCAGAGCTCATTCGATGACGACAATGTTGACTTGGAGCTAATCATCCGTCTGGTTTCTTATATTTGCCAAAATTCTGTTGAAGGAGCCATTCTGATATTTTTGCCTGGTTACGATGAGATCATGAACCTTCGTGACACTCTGCTCAATAATGAGAGGTTTAGCGACACTTCAACGTATAGGATATACACTCTGCATTCCTCCATGCAGAGTGACGATCAGGTCAAGGTATTCAGGGCTACCCCAAGCGGTGTCAGGAAGATTGTGCTGTCCACGAATATAGCTGAAACAAGCATCACCATTAACGATGTTGTATTTGTTATAGATTCTGGAAAAGTTAAGGAGAAAACGTATGATGCCCTAACATCAGTATCTATGTTGAGGAGTACATGGATATCCAAAGCAAGTGCTAAGCAAAGGAAAGGAAGGGCTGGCAGATGCCAAAAGGGAATGTGCTTTCATTTGTGCAGTCGACTTCGCTTCCAGAGTCTTTCAGATTTTCAATGTCCAGAAATCCTGAGGTTACCTTTACATGAACTTTGCCTGCACACCAAGCTGTTAGCTCCTGTTCAAGTCTCCATTGCTGATTTTCTTGCCAAAGCCCCACAACCTCCATCTTCTCTTGCCATCAGAAACGCCATTCAGCTGCTAAAGTCCATTGATGCTTTGGACCAATGGGAGGATCTGACAGAGCTTGGTTGCCATCTCGCTGACCTTCCCATTGAACCCCATCTGGGCAAGATGGTCCTCTACTCCATTGTTCTCAAGTGCCTGGACCCCATCTTGACCATTGCATGTGCATTGGCATATAGAGATCCATTTATTTTACCAAAGCATCCATCTCAACGAAGAGCCACTTTAAAGCAGAGGAAGAAGCATGCTGCCAACACCTTCAGCGATCACATGGCTCTCCTCAGAGCATTCCAGCATTGGCAGAGAGCAAGATCAGATGGATGGGAGAAGGTCTTTTGCAACAGGAATTTCTTGTCTCTTCCAAGTTTGGAGATGATTGTAGGCATGAGAACACAACTGCTTGGTCAGCTAAGGGCTTCTGGGTTTGTGAGAGCACGGGGTCCAGGCGATATCCGTGACCTGAACGCCAACTCAGAGAACTGGGCTGTTGTGAAGGGCGCCCTCTGTGCGGGAATGTATCCCAATATTTTACGGGTGGATAAGCTGAAAGGAACGCTATGGTCAATGCAGGAGAAGAAGTTGCGGTTTCATACCACATCAGTTCTGACTGAAGAAGCCTCTGAGTATAAAACAATGCAGCAGCTCCATTCCATTATCCTCAAGGCGCTGCCATCTGAGTGGCTCATCTATCAGGAAAAGACCAGACTATTCCATTCAACAAGCGTCAGATGCGTCACTCTAGTCTCACCTGTTACCATTGCCCTCTTTTGTGGTCCGTCATGCTTGCCAGAAGAAGCCCTCCTCATCCCAGAGGCTGCATGCCAGGCCCAGAGGCGGATGGGCCCAAGCGGAGACGGGGATGACAGCACTAGTGAGACGGAGGATGATGCAAGTGCACCCATGGCTCTGTTTAAGATGGATGAGTGGCTGATGGTCAAAATGGATGTAGAGGCTGCTAATCTTGTCGTCAATTTGAGGCAGAAGTGTCACACCTTGGTTTTAAGACGGATGAGGACTCCTGCCAAACCATGGTCTCAGGCTGATGAGGCAGTGCTAGACACACTGGTAAAAGTTTTGAGCAGCGAGGAACAGGCTTTGGGTCTACAGCAACCGACTGGTGTGGGACAGAGACCAAAACCTATGGCAATTGATAATTTCAACAGCCCACCCCCAAGATCAGTGGAAAATCGTTTCGGGCAGGGTGGCAGTGTGGCTCGTAACTCAGGTGCCATTGGCAGAGGAAGAGGTTCTCCTCAAGAGAAGCGGAACAATGCTCGAGACTTTAGATCAAGCCCAGGTCGTGGGTCCAATAGAGGATGGTACGGACCTAACCAACACGCAGCATATTTCAATAACAACTCCAGCAATGGTAACAACTACGCCATGCACCAGGGCTACTCTGGTGGGATGCCTTCCAGGTATAATCAGGGATCTCGAAATAGAACCCCAGGCTATCAGGATGATGTTGGACCTCCACCTGGATTTGATTCTTTGAATTCAAATATGCAACAGATGTGGTCAACTCAGGAAACAGATGACAGAGGTCAACAAAGGACACCGCCTCCATTCCAGCAGCACCGACCAAACCCTGATGCGAGACCTTTTGACCCAGGCACCCCATGGTGCATGGACGACGAACCATTCCGCCCTGTGGCCCACTCCACCCCATCATTCTTGCAGGGTCCAACCAGTCAATTTGGTCTCGGGAATGGAAATTTAGGCACTGGATTAGACGGCGGTGGTGGTTCAGCAGTATGGAGCACATGGCAACAAGGACCCGAAGTGGGTGACATGCCATGGAGTAACGACCGCATTGGAAAATTTGGAGacatcaagtactccgtggtttgcgttttccacgttaccccggcgcttgcactggagcggaggctattgtctccggctcctcactccccggcagctaccacggcttggcatccccctgaggtcttggaggaggatgccctcgacctctttcctttgggagaagaagtcgattttctggacgtcttggatacggcgcgggacaaccccccgcgtagactgctcagctcagcttcaaagaatgctccgccaacggctaagaatttccccattgatgcctccctggtgtacaggattaggcattgggctaggaccccggccaaggactggacggcctacaaccgggacgttgatcaggccacacatgtccagccaactgattttcaggcgttcatacggaatcccggacggagtatggcaactcctccggcgagcggcaccgcagctgtgtctggctccgtgggcagggttccgaaatttcgtgaccctgcggtccagcgaagggaatactccctattagctgtcgaccgggccgtacgacgggattataaacaccaggcccttgccgtatgggtaacagagggcttagactcggtcttgcgcaggcatctcccggccgacgtccttacacaaaccctgcctctgttaactggactctcggatttgctcgacgcgacagtcgaccgacttgcccgagcctccactaagacggtccgggagagacgcgagaatgttctccctctccttggactctctgccgtcactcaggaggatcttcggcggttgccaactgaaggtccggacctatttgctggtcacttctgtgatgttctgttgcgccaagctggccgccaagacgatttttggaagactctgaagctgttagcgaagactaagtctttctcttcccgctcgtcgCCACCCTTCATCCCCCGTTTAGCGGGACCGGGGTGCgaattttcagaagcttggggaagaatcaccaccgacaagtgggtgttacgaaccattcggcagggttaccgtctggagttcacgtctcccccgccccagggaggggtctttcgacccacgtctcgtcggggcgaccacaccgagttgttgaggtcagaaatcggggagttgctggcgaggtacgccatcactttcatcccgaaccctcccaggaacctcgtaatgtccacgtttttcctggcccccaaaaaggggaacaagtggcgcctgataatcaatctaagaccgctcaacaggtttatccgaccgttgaagttcaagatgaagactcttcgctccatcctccctcagttgacgaggggcctgtgggccacctccgtcgacctcacggacgcatatctccatgtgccgatgtttgaggaacacaggcgttttttggcgttccaattcgagggagttacgtacacgttgagggcgttacccttcgggctttcgactgcccccagggtcttcacccggattacgagagttctagcggccttcttacgaaggcagggcatcagaatctgtatgtaccccgacgactggctgatcgttgcggtagacgcagccaccgtcgcgagacacacgaatgtggtcatacgggtggcacaggacttaggatctactgagtcatttcgtaccatccaggagagacctcagcgtcctcgttccccatcccttctgtcttggattgcggacacgattgcggttctgttgtcccgcctcggaggagcccccacagaatgggcccttctcccgcgggtggccgaggcgatctggtcgaccttcggtctcccggacgtggatttgttcgcgtccttggacaaccacaagctaccaattttttgcgctctcacgcccgactcgagagtctgggtgggcccacttcgtcggctacgccttcccgccgttcactctagtgccaagagtactgaacaaggtggtgtccgatcagtgttcgatgtttcttctggtaactcccaattggcccggccagctgttgttccctcagctgctcggtcttgtcgcaggtttcccgtacgagcttccggtcacggacgagttagtctccattccgggctccggcaaactgcaccacaacccaagtgcgctccatttgactgtgtggcctctatccgcaaatcccttgtgtcgcaaggtctttcggaggcggctgcccaaatggcggcctgtagccggagatcttccactttgggcatgtatgcttccagactcggaatgttccgagactggtgccgggatagatcggtttctccgcatacggcgcctcttggtgacgtagcggattttttttttttggtccagtttaatctgaataaatccatcaatacggtcaaggggttcaggacggccatagcggctatccaccggggcttcccagacggctcgactgtcaccgacgcacggcctctggaaagattgattaaaggtatgttcttgcaacggccttcaattcggaaccttgcgcccccttgggatatgcaggtggtcctcgagactttggcacgggctccgtttgagcctctgccggattgtcctctcaaggaactgacgatcaaaacggtgtttttactctccgcggcctcggctaggcggaggggcgctcttcacgcgctttccctcaaagagggtcatattcgctttgaatcggggggcgttcgtctcgttcccaaaccggccttcttagcgaagaatcagacgttcgagtttttgccggaacctattttccttccgtcgctcgctacgttttctgacacgacggaggacagggtctggtgtcccgttcgttgtctcaaacactatatcaagcgtacgcaatcttttcggaaggacgttaccgcttttttcgtgtccttccaacagccgcatcgagccgtctcgcgtgatacgatttcacgttggattgttcaggcgatcacatataataggtccgcgttgttcgcggaacgttcggttcaggcacaccaggtacgaggcatagctgcgttaattgcgctttttggtggggttccccttcacgagatccttcgtgctgcagtgtggaaaacgccagccactttcgtctcagcttacctggtggatattccggactatcagggcggagttgcacgggccgtgctttctggaagaggaccacccccttcttga

Transcript

Chiridota_g19943

Protein

Chiridota_g19943

MGKKGRKRDVEVREDFKLGVQVVIDGFRNDETKRELEFPSSLDNNQRAFIHQYAASLGLKSKSRGKDFNRYLTLFKKDINSVADQIPVFQFTQSARRETQGLFQRYPVTARERQELLPRTERRRFGPNDANPARDIKPPTGKLTSVLPQIPIKRKPSDLDQFRRGLPVFAMGTSVLELVNSNRVVIIAGETGSGKTTQVPQFILDHACETGQPCRIICTQPRRISALSISQRVAAERGETVGQTVGFQIRLESRVSPKTLLTFCTNGVLLRTLMMGDAALRAVSHVIIDELHERDRYSDFLLTQLKALLPKHPHLRIILMSAALDIDLFVGYFDNCPVLEVPGKLFDVEELFLEDALKCTGYTNKKMEKYLKDKEKKAKQCAELDKWTSGQVSVSSEVGAAAAAGTIASGVSSLREGLGSCSLDVPLDAKDMPDWLVEATENAISQAWLHGSDAAFSQLLHYIMSENVSVDYAHSHTSITPLMAAAARGNMEVVEKLLSFEASVHLKTANKKTAADLAKMCNQTEVATFLEAYRQSLDDTLDDDSSLPTNGAVISSEDKELLEAYQSSFDDDNVDLELIIRLVSYICQNSVEGAILIFLPGYDEIMNLRDTLLNNERFSDTSTYRIYTLHSSMQSDDQVKVFRATPSGVRKIVLSTNIAETSITINDVVFVIDSGKVKEKTYDALTSVSMLRSTWISKASAKQRKGRAGRCQKGMCFHLCSRLRFQSLSDFQCPEILRLPLHELCLHTKLLAPVQVSIADFLAKAPQPPSSLAIRNAIQLLKSIDALDQWEDLTELGCHLADLPIEPHLGKMVLYSIVLKCLDPILTIACALAYRDPFILPKHPSQRRATLKQRKKHAANTFSDHMALLRAFQHWQRARSDGWEKVFCNRNFLSLPSLEMIVGMRTQLLGQLRASGFVRARGPGDIRDLNANSENWAVVKGALCAGMYPNILRVDKLKGTLWSMQEKKLRFHTTSVLTEEASEYKTMQQLHSIILKALPSEWLIYQEKTRLFHSTSVRCVTLVSPVTIALFCGPSCLPEEALLIPEAACQAQRRMGPSGDGDDSTSETEDDASAPMALFKMDEWLMVKMDVEAANLVVNLRQKCHTLVLRRMRTPAKPWSQADEAVLDTLVKVLSSEEQALGLQQPTGVGQRPKPMAIDNFNSPPPRSVENRFGQGGSVARNSGAIGRGRGSPQEKRNNARDFRSSPGRGSNRGWYGPNQHAAYFNNNSSNGNNYAMHQGYSGGMPSRYNQGSRNRTPGYQDDVGPPPGFDSLNSNMQQMWSTQETDDRGQQRTPPPFQQHRPNPDARPFDPGTPWCMDDEPFRPVAHSTPSFLQGPTSQFGLGNGNLGTGLDGGGGSAVWSTWQQGPEVGDMPWSNDRIGKFGDIKYSVVCVFHVTPALALERRLLSPAPHSPAATTAWHPPEVLEEDALDLFPLGEEVDFLDVLDTARDNPPRRLLSSASKNAPPTAKNFPIDASLVYRIRHWARTPAKDWTAYNRDVDQATHVQPTDFQAFIRNPGRSMATPPASGTAAVSGSVGRVPKFRDPAVQRREYSLLAVDRAVRRDYKHQALAVWVTEGLDSVLRRHLPADVLTQTLPLLTGLSDLLDATVDRLARASTKTVRERRENVLPLLGLSAVTQEDLRRLPTEGPDLFAGHFCDVLLRQAGRQDDFWKTLKLLAKTKSFSSRSSPPFIPRLAGPGCEFSEAWGRITTDKWVLRTIRQGYRLEFTSPPPQGGVFRPTSRRGDHTELLRSEIGELLARYAITFIPNPPRNLVMSTFFLAPKKGNKWRLIINLRPLNRFIRPLKFKMKTLRSILPQLTRGLWATSVDLTDAYLHVPMFEEHRRFLAFQFEGVTYTLRALPFGLSTAPRVFTRITRVLAAFLRRQGIRICMYPDDWLIVAVDAATVARHTNVVIRVAQDLGSTESFRTIQERPQRPRSPSLLSWIADTIAVLLSRLGGAPTEWALLPRVAEAIWSTFGLPDVDLFASLDNHKLPIFCALTPDSRVWVGPLRRLRLPAVHSSAKSTEQGGVRSVFDVSSGNSQLARPAVVPSAARSCRRFPVRASGHGRVSLHSGLRQTAPQPKCAPFDCVASIRKSLVSQGLSEAAAQMAACSRRSSTLGMYASRLGMFRDWCRDRSVSPHTAPLGDVADFFFLVQFNLNKSINTVKGFRTAIAAIHRGFPDGSTVTDARPLERLIKGMFLQRPSIRNLAPPWDMQVVLETLARAPFEPLPDCPLKELTIKTVFLLSAASARRRGALHALSLKEGHIRFESGGVRLVPKPAFLAKNQTFEFLPEPIFLPSLATFSDTTEDRVWCPVRCLKHYIKRTQSFRKDVTAFFVSFQQPHRAVSRDTISRWIVQAITYNRSALFAERSVQAHQVRGIAALIALFGGVPLHEILRAAVWKTPATFVSAYLVDIPDYQGGVARAVLSGRGPPPS*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF01424	R3H	R3H domain	Domain	Interproscan
PF04408	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001374	Domain	R3H domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR036867	Homologous_superfamily	R3H domain superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR048333	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-